NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003718

3300003718: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300003718 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0088396 | Ga0008277
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18639623
Sequencing Scaffolds11
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum3
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
Not Available1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000155Metagenome / Metatranscriptome1877Y
F001099Metagenome / Metatranscriptome778Y
F002698Metagenome / Metatranscriptome536Y
F009292Metagenome / Metatranscriptome320Y
F011850Metagenome / Metatranscriptome286Y
F024200Metagenome / Metatranscriptome207Y
F039672Metagenome / Metatranscriptome163N
F068876Metagenome / Metatranscriptome124Y
F076148Metagenome / Metatranscriptome118Y
F081370Metagenome / Metatranscriptome114Y
F097384Metagenome / Metatranscriptome104N
F101139Metagenome / Metatranscriptome102N
F104958Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0008277_101797All Organisms → cellular organisms → Eukaryota → Cryptophyceae961Open in IMG/M
Ga0008277_102283All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum749Open in IMG/M
Ga0008277_105478All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum884Open in IMG/M
Ga0008277_107483All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1635Open in IMG/M
Ga0008277_110396Not Available673Open in IMG/M
Ga0008277_110705All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium576Open in IMG/M
Ga0008277_110842All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes837Open in IMG/M
Ga0008277_111705All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium794Open in IMG/M
Ga0008277_112700All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea783Open in IMG/M
Ga0008277_122496All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum628Open in IMG/M
Ga0008277_125018All Organisms → cellular organisms → Eukaryota → Cryptophyceae536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0008277_101797Ga0008277_1017971F011850SMFKTSAVILAGLMGAEAFAPSGVAPTSSRLALRASTARKSGLVGPKMMDASSIADGVQLIAANGVANVPFVDEVTGEGLGFTSPLSHFESVIGLWVLFSLPVWSAAYKKVGGDTPDWFGVSQVTEEAPGIGAFPRYAPAYDGPSFSEGLTYVLSFLWKPPILIAWKPRADLDRAAMDPARETVVSSIYKGFGGALDKTAVYDEEDQLLILSDIETFPETELGRRREKIAEASGLYSGNPSFGKSLIEYSEETKKGKKDFGTVTISAAELAALRAEAAKKK*
Ga0008277_102283Ga0008277_1022831F039672MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEVTLDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGS
Ga0008277_103006Ga0008277_1030061F000155MKFAAIAVVATVSANTYDFMGEDELLAQLSTTLSSAQRSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008277_105478Ga0008277_1054781F009292LDQLLQLTLTSLPPRPIHSMPSDNPPMSQSMTVKAITLKVNPTYSQDVVESVTLKSFRKVVGYDTFNSILKGARDEKKDISDHYNVTLTVMVKRIPESTATHVNDAFAGGKSLKDVLDKGFPYDDGDNSIDDQTANWSKKNHKGQIQVGKLNGENVTKSALVNLIKDTDAPITQALVQLDSEKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVAL*
Ga0008277_106318Ga0008277_1063181F076148KYTIALAALLGLASFQDVQAITLFNTAGQAIYMEDSESSSSSSSEAANVQLEGDDEEVDHSGEFFHAGQHEMLGGGGYDRVTPANFAADSDDIFMRSMIEQYALEQKTKEGNPSGKFWMNEATTRAAAREVLETHKGLKGAALDKYLNTYFAKAWGHFDVNRSGLVEVIKMPQFMRFLASDQYMSLQP*
Ga0008277_107483Ga0008277_1074832F104958MAGFNVTALDNFNNELAGELLVKSVIAGSTTEFVTVKEGIKYKEPINLQEIDLVIQDGNTCVSTPSGSVSYTQRDITVCTRTSYDGLCLKDLDTKYIGLLGPQGSYPETYAFVEEYASQLVANFQKKNDQFIWTATTEAGDCSVGLNTLLASGSGATFVSQSAPDSSNIGNQIDEQLETLAVDVQDRDDLTTFLSVANFRKYIVWLRTQNNFFFDPSAVENRGSLLSMKHPYANLTVVGTVGLQGSNRIVTGPARQIVVGTDLISDLDNFQLWYDINGDQLKHRIVTKLGVQVAYPEFWVTNNL*
Ga0008277_110396Ga0008277_1103961F101139KKLKIMLNLNNKKELILEVLNSYENLTIEQLESLINNTNLNGVSFVSVKGYSSEKSNNTEVANQVINIGASYKNMLKKDTNIYANFDLSSVDVDAFNYDTINTNGLTLNEYKKAVKDSLEIALNELSQPKKKKVSNDIYFNNALAFNTNTRKLSLLGQTINKTIEKKGTFKVVKSAPKTIAKKLIERKAKGKTQTLRRFAIDNLVGSVKVSGEVVEIG*
Ga0008277_110705Ga0008277_1107051F001099AVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008277_110842Ga0008277_1108421F068876NKQTEGLVAIKIFVKAGEGQARIMAIADILDVSLQNKKLTNGTELGTSYLNVEGLDPSNKALYSARYLIPFKLYGE*
Ga0008277_111705Ga0008277_1117051F002698QIDRIDQHALTEFINRVKLIDSFIYMKIKEGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSADQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA*
Ga0008277_112700Ga0008277_1127001F081370MDNSLSVVPLLEEITSILLMAWMNLGEVDHLLVELSLLETLVYEEIILLMHGSVASLASSLENLESSSESGGVVGVPGDLGWPVRVTVMHTNGVDLLFITLDTVRGTNVVSEKPSFGFTVSGEEWVRGQGLDNRSSQSADFSLLFIER
Ga0008277_122496Ga0008277_1224961F024200TIIALIGAVAASQVEYAPIADETLVQTSQEAPCVYLDETVGELEYQMEMFSRTLDPRHWTNVQNIHSALVKKGTKNLPKLQVNTWGLYDKAFSFPRIRRYNFVCENMDMLEHFQDNLNTNISNTIHMENFLRVANTVHTNLLTKYHDGEFVDPALYDPKDEENK*
Ga0008277_125018Ga0008277_1250181F097384IRKHNYQTQVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRVEQASIETYAVKSRSLPPGGKSMIDTLGATVAFVVRYDLGTVCYIGYNYNTPFHADQWTRVLHSAIDM*

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