Basic Information | |
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IMG/M Taxon OID | 3300003726 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063445 | Gp0056834 | Ga0006122 |
Sample Name | Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3B (Custom Analysis) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 10321741 |
Sequencing Scaffolds | 4 |
Novel Protein Genes | 4 |
Associated Families | 2 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | desert biome → desert → soil biocrust |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Colorado Plateau and Sonoran desert | |||||||
Coordinates | Lat. (o) | 38.42 | Long. (o) | -109.4099 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001042 | Metagenome / Metatranscriptome | 794 | Y |
F059546 | Metagenome / Metatranscriptome | 133 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0006122_102753 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus | 620 | Open in IMG/M |
Ga0006122_103082 | Not Available | 532 | Open in IMG/M |
Ga0006122_104734 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1227 | Open in IMG/M |
Ga0006122_106408 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 917 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0006122_102753 | Ga0006122_1027531 | F059546 | LKKIMMLAALLAMLVVAAIPAIAQVEQGFEQETESGEAEQSFEISSTGDNGSQCANVNGTLNTGNLQNTNGMIQYASDIEELEQEDIGSDLSVTGTGTVTCEQQVNQAAAAG* |
Ga0006122_103082 | Ga0006122_1030821 | F059546 | MKKMMMLAALLAMLVVAAIPAIAQVEQGFEQETDSGEVEQSFEISGSGDNGNQCANVNGTTNTGNLQNQSGSIQYASDIEEFEQEEIGSDLSVTGTGSVTCEQQVNQAAAAG* |
Ga0006122_104734 | Ga0006122_1047342 | F001042 | MPKNCCAYLTVTLQRFFGFILIQAVIIKLMTTSHPIEGNFASDFSKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSVSNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEAIDLINLIVSASEAGGENG* |
Ga0006122_106408 | Ga0006122_1064082 | F001042 | MITSHPIEGNFTSNFSEDSEREAEGKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLE |
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