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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003727 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063445 | Gp0056833 | Ga0006121 |
| Sample Name | Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3A (Custom Analysis) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 11003238 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. RS9916 | 1 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 351MFTsu5.1 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | desert biome → desert → soil biocrust |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Colorado Plateau and Sonoran desert | |||||||
| Coordinates | Lat. (o) | 38.42 | Long. (o) | -109.4099 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000817 | Metagenome / Metatranscriptome | 879 | Y |
| F001233 | Metagenome / Metatranscriptome | 741 | Y |
| F028810 | Metagenome / Metatranscriptome | 190 | Y |
| F030100 | Metagenome / Metatranscriptome | 186 | Y |
| F030355 | Metagenome / Metatranscriptome | 185 | Y |
| F032547 | Metagenome / Metatranscriptome | 179 | N |
| F034588 | Metagenome / Metatranscriptome | 174 | N |
| F102092 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0006121_100093 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa | 952 | Open in IMG/M |
| Ga0006121_100358 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. RS9916 | 585 | Open in IMG/M |
| Ga0006121_100824 | Not Available | 754 | Open in IMG/M |
| Ga0006121_101429 | Not Available | 771 | Open in IMG/M |
| Ga0006121_101560 | Not Available | 577 | Open in IMG/M |
| Ga0006121_101741 | Not Available | 776 | Open in IMG/M |
| Ga0006121_102275 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 351MFTsu5.1 | 572 | Open in IMG/M |
| Ga0006121_109709 | Not Available | 563 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0006121_100093 | Ga0006121_1000931 | F034588 | LPRWRLHPPASPLIRTSGCPSFRISGFTGDRSSSRLDSLSFGGAGCESSRSPLRFASPVSPTISFWVAPDPHPPVPADFRSESPRSSVPSGRPLRISGLLRLFVLGFVVQTFPKSPWFLLAQRRRFRLSRVAPKLPSSADPYLLPQVAPASAFTAGSMITPWLNRTLHPRLAPWMNLRYQSGTSIPDLISSALLISIHCSQSADHEL* |
| Ga0006121_100358 | Ga0006121_1003581 | F102092 | FQVT*FPAWLSTGMPGMEHCEQKRRAFRLSAPQWLFSPAAGSMLPGSPLAASCPEPXARNGFSLARNGCRLSATSIPGSKLPACYFASFQVASVPVRLFGSTTAFRIAVRSRRLHCLKPVALPLPGSACRACRLHSPPGLLHPSGSKRSTAFAACRSA*RIRPISFRSPPPVLMKVWAADHRSRSATFPPACCS |
| Ga0006121_100824 | Ga0006121_1008241 | F000817 | LRWMAAVNRSKPKVSRIIPGNWGKAESGWLARPLLRRIARFDGGGRIHQFL* |
| Ga0006121_101429 | Ga0006121_1014291 | F030100 | IPGDWGKVESGWLAQLLRERIERSEGRGRIHQFLWQRSRAVSKREKGTEGRGTIRNRSEFSQVARGSFESGRIAVTRG* |
| Ga0006121_101560 | Ga0006121_1015601 | F032547 | LPLVLPAPYFRSARIKAPGHASRLTPDRNPYLGTAFHSLDKTARFRTTLPKSMLLAYPFGSSLSLPRTRSIRPLVHAAWLAPNCANSTRQTRCPVPSQRPRPLFRPTLPFRAFGPFPIKALTSIPIERFTESTRPIALRSPLPAVLIEPATDQCSRLATSRSAYC |
| Ga0006121_101741 | Ga0006121_1017411 | F001233 | AVNRLKLDLSRIIPGDWGKAESGWLATPLLSRIARFGSRGRIHQFLWRRSRVVSYAKWELRDEER* |
| Ga0006121_102275 | Ga0006121_1022751 | F030355 | DLISSLALRGHAPHRASRSIALDVSPVSSPTGVFATRRINAFRHAACCSRSGPVARNGLSLACNGCSFSEHPSQGQRSGPATSLPSARLHCPFGFPLRHRFPVGPGRRRHRRVNPVAALARASIGCSCGLHSPSGLLHPSGSKRSTASAAIRPAFRIRPISSRSPKPVLFLGSASDHRSWSATFPEARCS |
| Ga0006121_109709 | Ga0006121_1097091 | F028810 | PTIQLPPGMHGRSCAIWVMVRIASCAPRVVTFARLGSTPLRHASRLTPDRNPLLGTAFRSLEKTARFRATFPKSMFLAYPFGSSSSLS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |