NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300003854

3300003854: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BELIZE.2



Overview

Basic Information
IMG/M Taxon OID3300003854 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095504 | Gp0096019 | Ga0049114
Sample NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BELIZE.2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56563071
Sequencing Scaffolds14
Novel Protein Genes23
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Gutless Worms Symbiont Microbial Communities From Various Locations
TypeHost-Associated
TaxonomyHost-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000084Metagenome2468Y
F000143Metagenome1933Y
F000223Metagenome1528Y
F005172Metagenome409Y
F007963Metagenome341Y
F011565Metagenome289Y
F013391Metagenome271Y
F016113Metagenome249Y
F019279Metagenome230Y
F020495Metagenome223Y
F038085Metagenome166Y
F043246Metagenome156Y
F053066Metagenome141Y
F067460Metagenome125Y
F071963Metagenome121N
F086615Metagenome110Y
F094916Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0049114_1001383Not Available1769Open in IMG/M
Ga0049114_1003477Not Available740Open in IMG/M
Ga0049114_1003526Not Available733Open in IMG/M
Ga0049114_1003739Not Available705Open in IMG/M
Ga0049114_1004516Not Available626Open in IMG/M
Ga0049114_1004524Not Available626Open in IMG/M
Ga0049114_1004950Not Available597Open in IMG/M
Ga0049114_1005039Not Available591Open in IMG/M
Ga0049114_1005351Not Available573Open in IMG/M
Ga0049114_1006088All Organisms → cellular organisms → Eukaryota541Open in IMG/M
Ga0049114_1006113Not Available540Open in IMG/M
Ga0049114_1006331Not Available532Open in IMG/M
Ga0049114_1006905Not Available514Open in IMG/M
Ga0049114_1007072Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0049114_1000654Ga0049114_10006542F019279MNNTVEKLRYGFPKVTWLQYTGEGASVRAIDVSQDLTHQKSLKSVNF*
Ga0049114_1001322Ga0049114_10013223F000143MCGSMADIQSATAEIRRGKKRQKKKEETIGQKYNGLPYYIGRP*
Ga0049114_1001383Ga0049114_10013831F053066MNVIAKISCYFERSVVTLKLRKEYLNAATYNMPALLQMKQ*
Ga0049114_1002198Ga0049114_10021981F043246MEFGHLILRKAIKIVANRCQILRLKCTKIDFGWGSAPDPAGGAY
Ga0049114_1002364Ga0049114_10023642F000084MIKIVATRCQILRLKCTEFDFGWGSAPDPAGGAYSAPPDPLAGFKGAYPKGREEME
Ga0049114_1002672Ga0049114_10026723F067460MQAAKKLVLVDEFDREYKRLQRPVDKVAKVDRSLQLSDTLRDPSVADDRKVREYVAALHRYLN
Ga0049114_1003477Ga0049114_10034771F016113MHGSTQRCCSELAELTVDDIWQIAGASDQQLHRLAHSGRRDTLELSAEDNDQLSQQACTAFAEE*
Ga0049114_1003526Ga0049114_10035262F020495VSQKNCAKLFLSQLRQISTNFDNFWQKDGKEAEIMQGALIFHLI*
Ga0049114_1003739Ga0049114_10037391F094916VRQWLQYLFRNHKEFIRLKQQNQLYVDENAIQLLGSNLELAEVDSGLVQCTANEAKKIEEAIERDDDGLTDSTATSGFSESHVFSFDRYEPLYLKSKDVLRIRKEGKLEIIEDPSVRKPTYCVSANLAFPHLYPHGEMSPLDFGEYKLARYLLKKQALYAHRMSDGRLQWNFAEDDIHMAHQYSRLSEQTVRATVGYYVTSHPSVAHVPLDNILTAFRDGVSQHSGLLDSHLPD
Ga0049114_1004516Ga0049114_10045162F005172CSKKSDAKTEITITTSNLIRIKHPLSNFNYHLSGANVANFNKIHRTVSEQQLFKKWNSKTEVSNQPQKSVQC*
Ga0049114_1004524Ga0049114_10045242F086615MQHLIAAWSGLEQRVVDKAINEWHGRLHACVRAEGQHFEHLH*
Ga0049114_1004950Ga0049114_10049502F053066MQKKELIAKISCYFERSVVTLKLRKEYLNGVRYNTPVLLWIKY*
Ga0049114_1005039Ga0049114_10050391F086615MQRLIATWSGLEQRVVDKAINEWHGRLHTCVRADGQHFEHLF*
Ga0049114_1005095Ga0049114_10050951F000223MTDARLYADDPIQGQGQGHGASEVPKFALFKVHLLRHLQLYLANDHCFLN*
Ga0049114_1005351Ga0049114_10053511F016113MHGSQRCCGQLAKVTVSDIWQTADAGDQQLQRLAHSSRRYTLELGAEDNDGLSQQACTAV
Ga0049114_1005669Ga0049114_10056691F038085VVICLEQGANDLHMVQLMPLPPHHLLLKQNPDWFILLVPAYPGCPAKRPLNG
Ga0049114_1005899Ga0049114_10058992F071963MMIVWRTRGDYRTARAVLEAIIAFSAMHTYYEQLLQVKQICLCLTGFTSLCLDAYVFLCSLVFHCMHVVLL*
Ga0049114_1006088Ga0049114_10060881F013391NPLDYSTWDILQELVYEGRREPFANLKDLQNVIRDKWHDVDDQTMRKAILQWKRCLAAVVKQNGGLIQHIFC*
Ga0049114_1006113Ga0049114_10061131F007963MTEFNFAYHHNVAVKHSKRLIVLMMLDSVTELYDNDASDTATLRHYLRQYTYIDYTTDDWLDRLLYALPLRGLPELNHNHHDAAAAHDDDVPLLEDIPLH*
Ga0049114_1006331Ga0049114_10063311F071963MIVWRTRGDYGTARAVLEAIIAFSAMHTYYEQLLQVKQICLCLT
Ga0049114_1006905Ga0049114_10069051F011565MSTPYAKDLGNLLYHSAVVGGLSVGYSMVGKKLLKMKPADLGRLDVEDGAKLVGTVALAFWTQDMLVKQGIIPANIIKIAAT
Ga0049114_1007041Ga0049114_10070411F043246MKFGHLILRKIIKIVANRCQILRLKCTKIDFGWGSAPDPAGGA
Ga0049114_1007072Ga0049114_10070721F053066MQKMNVIAKISCHFECSVVTLKLRKEYLNAVTYNTPVLLWIKY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.