Sample 3300003897

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003897

3300003897: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 03

Overview

Basic Information
IMG/M Taxon OID	3300003897 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047180 \| Gp0107757 \| Ga0063326
Sample Name	Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 03
Sequencing Status	Permanent Draft
Sequencing Center	University of Sao Paulo, Virginia Bioinformatics Institute
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	46628007
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Compost Microbial Communities From Sao Paulo Zoo, Brazil
Type	Engineered
Taxonomy	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sao Paulo Zoo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036417	Metagenome / Metatranscriptome	170	Y
F059782	Metagenome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0063326_1061019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales	625	Open in IMG/M
Ga0063326_1061846	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	639	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063326_1061019	Ga0063326_10610191	F059782	VRVEFETARGRVVPGKGSQVAAFFVSLEVHSEQLSVPERAELTQRLTTRIAEVIAEEFGGEEIEVRRSRE*
Ga0063326_1061846	Ga0063326_10618461	F036417	VLVRLATDDGEVVFRARWTRSPLELQRNILFRMRRGSLLWFQDEWGHDLCFRPECVYAAMVDGR*

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