NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003970

3300003970: Enrichment cultures from Lake Fryxell 39872



Overview

Basic Information
IMG/M Taxon OID3300003970 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113966 | Gp0109835 | Ga0063602
Sample NameEnrichment cultures from Lake Fryxell 39872
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Michigan
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83774997
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHarmful Algal Blooms In Lake Erie
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → glacial lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013535Metagenome / Metatranscriptome270Y
F022487Metagenome / Metatranscriptome214Y
F038305Metagenome166Y
F050234Metagenome / Metatranscriptome145Y
F072103Metagenome / Metatranscriptome121Y
F104508Metagenome100Y
F105523Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0063602_102391All Organisms → cellular organisms → Bacteria → Proteobacteria2983Open in IMG/M
Ga0063602_103086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2611Open in IMG/M
Ga0063602_103472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales2465Open in IMG/M
Ga0063602_103856All Organisms → cellular organisms → Bacteria2334Open in IMG/M
Ga0063602_105095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2005Open in IMG/M
Ga0063602_123992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor687Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0063602_102391Ga0063602_1023914F022487MPIRRSPNGPHYPRPQPGRDHPEQVVAINRNDRSQSIGKGGRNHPVRAVGPS
Ga0063602_103086Ga0063602_1030862F104508MDLPVMLREALELQILEQEAERAATVIGTGVAQHGAVAVAGVLLEATAVALRRMVSITDEAFDLAELLTQLALDGAVPEHRLELLTDILTASAATAGGVRPSVEALQNRLGDQDLLFGAWLGILTGLRVVSLAIEVTEPELMEDVMLSFELFDEAG*
Ga0063602_103472Ga0063602_1034722F038305MAGWGDDPQLAELRTLVYEDGWTPVAVTEASDADTVVVEKEGEQRTFRSDHIAFHRFVEGVKEDFGL*
Ga0063602_103856Ga0063602_1038563F013535MLFELMLLYAYRTLALAVAIMMVWVLFRERNWQQQFFAMLVFVPFALRAAGVK*
Ga0063602_105095Ga0063602_1050951F050234MTPPLPLLLLLLEFPVLMALLDCWQRPEEHFAGGAEDRRSWLKWLGVGVLTVPVLLGFGIVLGYYHSVIRRNSPASRS*
Ga0063602_112102Ga0063602_1121021F105523MARPQIDDVTAVVKDAAYVSVGLGVIAFQRLQVRRNELSKALAGQTDDAKGTLDTVAAMVGDQLKLVEERVSAALERTPLR*
Ga0063602_123992Ga0063602_1239921F072103MTTILDTVVSYEDQLVDFVKKAQSPVVEYVAKGVELVEDRLPEVTYPTSLPTPIEVVETQVAFAKKLIDANTALVTAVLETVAPVAGFAKPKKVVKAAKAA*
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