Sample 3300003972

Overview

Basic Information
IMG/M Taxon OID	3300003972 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114039 \| Gp0109960 \| Ga0064067
Sample Name	Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant
Sequencing Status	Permanent Draft
Sequencing Center	Sao Paulo State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	180002460
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Composted Filter Cake Microbial Communities From Nova Europa, Brazil, From A Cane Sugar Milling Plant
Type	Environmental
Taxonomy	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Filter Cake Produced In Cane Sugar Milling Plant → Composted Filter Cake Microbial Communities From Nova Europa, Brazil, From A Cane Sugar Milling Plant

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	Nova Europa, Brazil
Coordinates	Lat. (^o)	-21.818963	Long. (^o)	-48.614275	Alt. (m)	N/A	Depth (m)	.2
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005784	Metagenome / Metatranscriptome	390	Y
F006009	Metagenome / Metatranscriptome	384	Y
F007999	Metagenome	341	Y
F044018	Metagenome / Metatranscriptome	155	Y
F044526	Metagenome	154	Y
F045843	Metagenome / Metatranscriptome	152	Y
F088555	Metagenome	109	N
F104908	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F005784

Metagenome / Metatranscriptome

390

F006009

Metagenome / Metatranscriptome

384

F007999

Metagenome

341

F044018

Metagenome / Metatranscriptome

155

F044526

Metagenome

154

F045843

Metagenome / Metatranscriptome

152

F088555

Metagenome

109

F104908

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0064067_1006112	All Organisms → cellular organisms → Bacteria → Proteobacteria	19139	Open in IMG/M
Ga0064067_1031001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1064	Open in IMG/M
Ga0064067_1034182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	632	Open in IMG/M
Ga0064067_1038700	Not Available	3509	Open in IMG/M
Ga0064067_1046303	Not Available	1042	Open in IMG/M
Ga0064067_1108496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	1453	Open in IMG/M
Ga0064067_1109565	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
Ga0064067_1128086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	601	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0064067_1006112

All Organisms → cellular organisms → Bacteria → Proteobacteria

19139

Open in IMG/M

Ga0064067_1031001

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales

1064

Open in IMG/M

Ga0064067_1034182

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

632

Open in IMG/M

Ga0064067_1038700

Not Available

3509

Open in IMG/M

Ga0064067_1046303

Not Available

1042

Open in IMG/M

Ga0064067_1108496

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans

1453

Open in IMG/M

Ga0064067_1109565

All Organisms → cellular organisms → Bacteria

1537

Open in IMG/M

Ga0064067_1128086

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

601

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0064067_1006112	Ga0064067_100611218	F044018	MFAISRTTQNAVCMILSAVIVSISLSLGALAAERAAHDGYTVTITQLQ*
Ga0064067_1031001	Ga0064067_10310012	F045843	MCLADLMGSREVITAAATAEVPQNKPAICGTVTLHCIDGDETLRLSMPMLDALLLLNSLRAIEEEFALQGWSAQIGCSANAMQEIAAELQQFADEMAVPSTALN*
Ga0064067_1034182	Ga0064067_10341821	F005784	FDGDAITAEDGCEIHITNSRIVAKGVGVTAHAANVHIRNSQIEGDSASVQASGGAQVYLHSSTFKGLPRRMDTATVHDMGGNVWN*
Ga0064067_1038700	Ga0064067_10387005	F104908	MDCQRPTKNKETGKWEVWDFAYEENGERYYELHEFWEYKDAIEFWKLRNPKQK*
Ga0064067_1046303	Ga0064067_10463031	F044526	AARGVFPPAGCKNEAAGREPIQVVLQAEKGKPVTLNIPRGYIEQPKDPEGVLPNVVLRIAAKDFSDAESFVPNSEVRVLIEPYASAVDAAHERHAAALRKHRSSVEALKKSAELSKGGLTAYTYPNGNEDAEAYYLKSKDGNVFVECRRSVCRAFRTWKEKRVHVRFDYQPVSTSDVEQVSAAVDRMLQTF*
Ga0064067_1108496	Ga0064067_11084962	F006009	MTHGEQKALWRGVAAGTMVGLAIGGMIALVIATKPGFFAALLQ*
Ga0064067_1109565	Ga0064067_11095652	F088555	MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGTGGMVQRKLYLYSDNFQRTYSQVQLTSLNSDSQVQIRYAVDQNGSPGTWQTTLDLPSGNYQTPVPVWVQVTFAPTDEPTLRTDLRHWLQWLEAVAG*
Ga0064067_1128086	Ga0064067_11280861	F007999	MDPTHQRGLKARENLVNALRECGELADAVEDFDGAELLEVLDYLDSLRFVMAESGQLLAGVVRGEMSR*

Scaffold ID

Protein ID

Family

Sequence

Ga0064067_1006112

Ga0064067_100611218

F044018

MFAISRTTQNAVCMILSAVIVSISLSLGALAAERAAHDGYTVTITQLQ*

Ga0064067_1031001

Ga0064067_10310012

F045843

MCLADLMGSREVITAAATAEVPQNKPAICGTVTLHCIDGDETLRLSMPMLDALLLLNSLRAIEEEFALQGWSAQIGCSANAMQEIAAELQQFADEMAVPSTALN*

Ga0064067_1034182

Ga0064067_10341821

F005784

FDGDAITAEDGCEIHITNSRIVAKGVGVTAHAANVHIRNSQIEGDSASVQASGGAQVYLHSSTFKGLPRRMDTATVHDMGGNVWN*

Ga0064067_1038700

Ga0064067_10387005

F104908

MDCQRPTKNKETGKWEVWDFAYEENGERYYELHEFWEYKDAIEFWKLRNPKQK*

Ga0064067_1046303

Ga0064067_10463031

F044526

AARGVFPPAGCKNEAAGREPIQVVLQAEKGKPVTLNIPRGYIEQPKDPEGVLPNVVLRIAAKDFSDAESFVPNSEVRVLIEPYASAVDAAHERHAAALRKHRSSVEALKKSAELSKGGLTAYTYPNGNEDAEAYYLKSKDGNVFVECRRSVCRAFRTWKEKRVHVRFDYQPVSTSDVEQVSAAVDRMLQTF*

Ga0064067_1108496

Ga0064067_11084962

F006009

MTHGEQKALWRGVAAGTMVGLAIGGMIALVIATKPGFFAALLQ*

Ga0064067_1109565

Ga0064067_11095652

F088555

MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGTGGMVQRKLYLYSDNFQRTYSQVQLTSLNSDSQVQIRYAVDQNGSPGTWQTTLDLPSGNYQTPVPVWVQVTFAPTDEPTLRTDLRHWLQWLEAVAG*

Ga0064067_1128086

Ga0064067_11280861

F007999

MDPTHQRGLKARENLVNALRECGELADAVEDFDGAELLEVLDYLDSLRFVMAESGQLLAGVVRGEMSR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003972: Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences