NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004069

3300004069: Combined assembly of 1362B_J2.571 and 1362A_J2.573



Overview

Basic Information
IMG/M Taxon OID3300004069 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0090290 | Gp0057564 | Ga0063354
Sample NameCombined assembly of 1362B_J2.571 and 1362A_J2.573
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size390457103
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Oceanic, Basalt-Hosted Subsurface Hydrothermal Fluid → Deep Subsurface And Oceanic Microbial Communities From Witwatersrand Basin, South Africa, And The Canadian And Fennoscandian Shields And At The Lost City Hydrothermal Field

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationJuan de Fuca Ridge flank, Pacific Ocean
CoordinatesLat. (o)47.76Long. (o)-127.76Alt. (m)N/ADepth (m)454
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003647Metagenome / Metatranscriptome475Y
F008290Metagenome335Y
F024529Metagenome / Metatranscriptome205Y
F031707Metagenome / Metatranscriptome182N
F056895Metagenome / Metatranscriptome137Y
F062402Metagenome130Y
F077253Metagenome117Y
F087900Metagenome110N
F093835Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0063354_1041454Not Available1079Open in IMG/M
Ga0063354_1052108All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon918Open in IMG/M
Ga0063354_1055640All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon879Open in IMG/M
Ga0063354_1059177Not Available842Open in IMG/M
Ga0063354_1069163Not Available755Open in IMG/M
Ga0063354_1079019Not Available690Open in IMG/M
Ga0063354_1085309Not Available655Open in IMG/M
Ga0063354_1101663Not Available584Open in IMG/M
Ga0063354_1121111All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon521Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0063354_1041454Ga0063354_10414542F077253MGEHEFLREIANDKQTPRQMRKVNTDGLFETTDCSEPDHICTCGSEQVTLTED*
Ga0063354_1052108Ga0063354_10521081F024529MFTSITSRQSFGATYQWAILSVLPMDDGDDGMTQDGMRPTDINAALGLPNEARTGLSMLLKVMAEQGLIKRHELGKRWVEYTRLVPLRNRERIARWVWQ*
Ga0063354_1055640Ga0063354_10556402F008290MPEKIRMKIRRAGYVQRVGDKDYIKVRSRIESVPMRKLAKLNRLGGRTWRLVQEGRDIFLVLEALTLEEEKEALKKEKYPKL*
Ga0063354_1059177Ga0063354_10591772F062402LAGSVAGLVASSLMIVCWFFRLRSALTEKGLKYTSKLGVLVWIMVLFMSVHVLLWKLGVIQKGGTFDSILMYTSATLNWIALVTVAVAMIFDAVKRRPTL*
Ga0063354_1069163Ga0063354_10691634F093835KAFDDFMNHAETEIDSYKKRKEAEDYTNKFFERKAAELEVTVDYYMQEFL*
Ga0063354_1079019Ga0063354_10790191F031707MAFLNWIQEATGCKVEDDRTGMIHTITGGKFLADSPMWPMIELTDETGVVRFATLDRFEEMISVG*
Ga0063354_1085309Ga0063354_10853091F056895MEMELKQIPKPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGFRPESEKRPDGTLPMQFDYDIIENKIDADIDSQ
Ga0063354_1101663Ga0063354_11016631F087900WHQYLQSFQEQVFVQQKINFYYCQVEDEDNHFPLAIARFTAYDQDHRPLSVEQVTYESDSNYFQRQVSAALSCGVDVSVITATPMEDFAWINQLSEHA*
Ga0063354_1121111Ga0063354_11211112F003647RASNKAFAKVTMLKLDIDDYKRSLINGTYGGITYEEAEQVLEGYKTELKVWNYITELIEKQ*
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