NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004090

3300004090: Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario)



Overview

Basic Information
IMG/M Taxon OID3300004090 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114265 | Gp0110092 | Ga0064458
Sample NameEurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario)
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size145209110
Sequencing Scaffolds39
Novel Protein Genes45
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available23
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Fictibacillus → Fictibacillus macauensis1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda4
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEurytemora Affinis Associated Microbial Communities From Braddock Bay, Ny (Lake Ontario)
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Eurytemora Affinis Associated → Eurytemora Affinis Associated Microbial Communities From Braddock Bay, Ny (Lake Ontario)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal corpus

Location Information
LocationBraddock Bay, NY, USA
CoordinatesLat. (o)43.30746Long. (o)-77.707341Alt. (m)N/ADepth (m)2
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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