Sample 3300004108

Basic Information
IMG/M Taxon OID	3300004108 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111384 \| Gp0097056 \| Ga0065181
Sample Name	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300004108 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111384 | Gp0097056 | Ga0065181

Sample Name

Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	480564897
Sequencing Scaffolds	25
Novel Protein Genes	31
Associated Families	28

Dataset Contents

Total Genome Size

480564897

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	1
Not Available	15
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus fulgidus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis

Not Available

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9

All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus fulgidus

Ecosystem Assignment (GOLD)
Name	Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Ecosystem Assignment (GOLD)

Name

Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → aquifer → groundwater

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Utah
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Utah

Coordinates

Lat. (^o)

38.9383

Long. (^o)

-110.1342

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000320	Metagenome / Metatranscriptome	1306	Y
F000449	Metagenome / Metatranscriptome	1126	Y
F001258	Metagenome	735	Y
F002298	Metagenome / Metatranscriptome	573	Y
F002777	Metagenome	530	Y
F010074	Metagenome / Metatranscriptome	308	Y
F016244	Metagenome	248	Y
F017787	Metagenome	238	Y
F023250	Metagenome / Metatranscriptome	211	N
F035627	Metagenome	171	Y
F038538	Metagenome / Metatranscriptome	165	Y
F042954	Metagenome / Metatranscriptome	157	Y
F048766	Metagenome	147	Y
F049412	Metagenome / Metatranscriptome	146	Y
F050899	Metagenome	144	Y
F058694	Metagenome / Metatranscriptome	134	Y
F060597	Metagenome / Metatranscriptome	132	Y
F069002	Metagenome / Metatranscriptome	124	Y
F069627	Metagenome / Metatranscriptome	123	Y
F075677	Metagenome	118	Y
F076872	Metagenome / Metatranscriptome	117	Y
F080880	Metagenome / Metatranscriptome	114	Y
F080881	Metagenome	114	N
F082132	Metagenome / Metatranscriptome	113	N
F089865	Metagenome	108	Y
F094906	Metagenome	105	N
F100366	Metagenome	102	Y
F102531	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0065181_1049905	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	1245	Open in IMG/M
Ga0065181_1078010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria	957	Open in IMG/M
Ga0065181_1085858	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	902	Open in IMG/M
Ga0065181_1090346	Not Available	875	Open in IMG/M
Ga0065181_1110661	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	773	Open in IMG/M
Ga0065181_1115913	Not Available	752	Open in IMG/M
Ga0065181_1118429	Not Available	742	Open in IMG/M
Ga0065181_1126861	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	711	Open in IMG/M
Ga0065181_1131496	Not Available	695	Open in IMG/M
Ga0065181_1131844	Not Available	694	Open in IMG/M
Ga0065181_1142548	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	661	Open in IMG/M
Ga0065181_1142809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	660	Open in IMG/M
Ga0065181_1144644	Not Available	655	Open in IMG/M
Ga0065181_1145775	Not Available	652	Open in IMG/M
Ga0065181_1150190	Not Available	640	Open in IMG/M
Ga0065181_1150563	Not Available	639	Open in IMG/M
Ga0065181_1156781	Not Available	623	Open in IMG/M
Ga0065181_1160076	Not Available	615	Open in IMG/M
Ga0065181_1168687	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9	595	Open in IMG/M
Ga0065181_1169198	Not Available	594	Open in IMG/M
Ga0065181_1174068	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus fulgidus	583	Open in IMG/M
Ga0065181_1200710	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	534	Open in IMG/M
Ga0065181_1203119	Not Available	530	Open in IMG/M
Ga0065181_1212501	Not Available	515	Open in IMG/M
Ga0065181_1213835	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065181_1049905	Ga0065181_10499052	F076872	GDQRKVFEKPHSLRRIFWGITVLAGNDVWRQTRISFDDPSFYSYYALDGQHKHFEMKGDGISQGDIWVYNASGISLLYTSIEILV*
Ga0065181_1078010	Ga0065181_10780101	F102531	FPASIIACQTQGADSPACQMGAAGITSGLFADPIGTLQGLQASAQQVQSVAQQGLTELSFASSILNLPNADNSAGWTLGTYGRQTNVIQPQKTVAGINQEIDKLVANGVDKLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK*
Ga0065181_1085858	Ga0065181_10858581	F023250	MRLKVLQIGSLVPLGWGFTETEAKKPAGFCTIKQATEFAMQNLGLKQGEFKVLKGRGVDL
Ga0065181_1090346	Ga0065181_10903462	F089865	VEIAGFISIGLLVVVQIGYFAYSFGKLDGTVKSIDKRLNDLTHRYDVMEERIGKLEGRK*
Ga0065181_1110661	Ga0065181_11106611	F080880	TTIKKKTNEIIEELAKTYGTKNRVLEQAVETLLRVEKVGSCEDCVIKAKMNEQTKLREALDLTSLGRKTLDGLLEVAVGDKTIQDFIKEQKAESKNIIEILRGTIEWKTPSNFKEFTIILEEIRNLTQMFDIASHSEIENTVILRPKAFKRLPEVVAFQTAVMLEGVGAPFEIRMMGEDIAVKMIRQEIYPLRKKEFGESLDQQIEKRLATSRPGLFKNSLMLVGPGFMNWAEKHLEEPVTDLGSIIEDVRIALGVD
Ga0065181_1114413	Ga0065181_11144132	F035627	MKNIKASVGVFPAQEQKPVEGGGVEEKEYTWKFNETLFYLRENPDCQMAVGGEWHGTKAGGVVGSVDTYFRHILTSRRCETVWDAVDGYAGFDDRWADDFEKIATHIEDLPNIEEIIRTERSMMMSEK*
Ga0065181_1115913	Ga0065181_11159131	F050899	GEHLKNNSLKEKNGGEKMLEKLRGKMKKGLMLFAIVAVILMGTAVLPGCNKEQPVEADELVVPESMSSYEVFNTTANAGPQIKTWPFWQGGWSAEYMDPYGMPQGASEEQFIVAFGAMLAEGFYTKRDGKQAGAGLFKSVLWITILRYENPESAKRSFINISETQELQDSTYGGIALKNGTHTLTWWEEESEDWDESTMPCYLIQSGPFVIYLFGRDDVAKDILDRIIVSFGVKDSTSISTLAANIASEK
Ga0065181_1118429	Ga0065181_11184291	F075677	MDLNEIITNITMTKACSIKVDKESKVSKIINLKVKFDGASLSSVFDKALAGAVIQWQNGVGRKRFDTYKPNQVVEIQFSAPARRSAIDPET
Ga0065181_1122609	Ga0065181_11226091	F060597	MVQTVKSQKVYTGWKVILLEKPHSSRRIFFSIKTLADQTTWCRSLISFDDPSFASHYIFDGPVQQLEAKGEGIFQGDIWAHNVSPVDLIFIITEILI*
Ga0065181_1126861	Ga0065181_11268612	F001258	MKSIEASVGVIPTQEQKEKVVEEGKKYIRKENEVIFCLDEAPEYQISVVARWGENARGEIVEQPDIYFRHISTGRLCQSVYACLVGVEHDQYAEEKWDTLYYRIRTMLLRDLRRIVCYEKKYDVHPI*
Ga0065181_1131496	Ga0065181_11314961	F069002	MNYAELSMAISDWLNKDSLDKVLPTIIRFGQRDLEDDLRIRPMEYHPVTANISAATASLALPSDFLELFYLVLIKDDVRYVVDGRESSRALYTERPSATETGTPCKVARVADDLVFDVLTDSAYTRDWFYYRRLPVLVATAPNNTNWWSEYAEEALLMSCLNKASGYVTGISAEDKAKWKEGALFTRENLKFNDAREATGGHVMRSSNWK*
Ga0065181_1131844	Ga0065181_11318441	F002298	EDKIKKGILSMTLKKIDNMMEKSDDIDRMNLEFYAMIGKTYGPQTVFEQHRAAIKIDTFRRDIGKRWAENMRKREEIYEILDMLYELAKIETENSGMENLGQISWAEIRQKIQERMKKILFR*
Ga0065181_1142548	Ga0065181_11425482	F058694	MVQTVRSEIIHAGCKKIIFEKPLVLHRIFFSINVLAPLDTWFESRVSFDDPMFFSYYTLTGHTKYFEAKGEGIFQGDVWLFNTSTGDVLYTMTEILA*
Ga0065181_1142809	Ga0065181_11428091	F042954	MEGVRTRRGLYGFEFRDIDQRRTSEDMPRKRFEIKALWQRSHEIINLASRGYKQSDIAEILNISEACVSTTLNSELGQKKLADIRLVRDEDAKKTSEKIRILTAKAIEKYHEIFDNEDGQATLKDQKDVADTVLLELSGLRAPTKIQSSSINMTLTSEEIEAFKSRGLKAAKE
Ga0065181_1144644	Ga0065181_11446441	F016244	FKNRIKINKMVLPILPGIIVLAGARILVSYGTHLLRFIVANPKILMGTATVVTVADALKEHEKNEEIRNSILQDIYTQNPELAGKIVSAGGFSFHPVENVFQMVIPWAIIGLIFYALFKKI*
Ga0065181_1145775	Ga0065181_11457751	F080881	MSKNSKSSVALSELAVLPQFVAPVVEIAPEVLSMIVMDIDPALIEAAEIKEARLDAVKAKKDDAKRLLAQAHEIAKTLNPLCDEQDNVEKERKLLKDVLKDALLATRVALANHPEILENKAQIVKAAPNLMAEFNEKFNAAVIKQTQ
Ga0065181_1150190	Ga0065181_11501901	F089865	MEITGFLSLGMLIIIQIGYFAYNYGQLNGKVANIDKRLNDLSHSVATIEERIGKLEGRK*
Ga0065181_1150563	Ga0065181_11505631	F017787	EEKNKEYKEMLDRVRTFILFKDMKKEMEKHKKEYNNMEKIIREGVHTETKEKYTLGVRAKFEVNFQYFEISKHPKFDDECVYLSRKFFFLKNNITDKERKEIEKFENDILNRFYYTQ*
Ga0065181_1150563	Ga0065181_11505632	F049412	MKTMKMMKTISGKVSSVFPELNCFEINSDIFFHDVKASIVKKLRLGKKITVQCRIKKIKSGDWTFTDFIFLKIINKKPINNKQNNNGKEKRKCRKC
Ga0065181_1156781	Ga0065181_11567811	F000320	MKNTKTPQNKEYKSEALCREIMYKINQIGQKIYKLKKDVNDVCGIILRKPGGTFFFEGRKAELWEEASDDFFKQWKEIGAEKYEVECLVNLMYDLVLQEEVKRKGKIILNAKRRTMSMAK
Ga0065181_1160076	Ga0065181_11600762	F002777	MKNIKKNTGANYHISMHTEIRSGKIIQKINEIGRKTYALKKKEGAFYAEALKKARRSTEFPGTDKLREMAYDRFEQEWKEIEDGKDEVNWMIHRLYISIEDEGEEK*
Ga0065181_1168687	Ga0065181_11686871	F069627	TASEIPIEVDLTDEDAIPIYMRISDKVLHLRRLGMPFTSIAEHLGINPWMAKKAARWGNIRKA*
Ga0065181_1169198	Ga0065181_11691981	F000320	QATMKNIKMPISKDYKSEALGREILRKINGIGEKIYKLKKDVNDICGLVLSRPGATMFVEGHKAELWNAASDDFSQRWKEIAADKYEVECMVNLMYDLALQEEIKRKGKIIFSTKRRAITTAK*
Ga0065181_1174068	Ga0065181_11740681	F042954	KGMTMEDVQTRNGLYRFDFREVDQRRVAEGEEKKTYNIKSLWQRSHEIINLAARGYKGTDIAEILGITPACVSLTLNSDLGQKKLSEIRLVRDEDAKKTSEKIRVLTAKAIQTYHEIFDNESGEATLKDRKDVADTVLLELSGLRAPTKIHTSSVSTILTAEEIESFKSRGLRAARETGFIDITEKSDEKCSSD
Ga0065181_1200710	Ga0065181_12007102	F048766	KNKTAKQRNEEIEEDKKIIDIMCKLGGGIKKNNQKIKKDI*
Ga0065181_1203119	Ga0065181_12031191	F082132	MVQTVCTISVLAGKKKIILEKPDKLRRIFFEVRTIADQAPVCTTWLSFDDPLFHTYFTFSGPMKYFVAEGPDINQGDIWIYNASGGDLNYTATEILH*
Ga0065181_1212501	Ga0065181_12125011	F010074	CGTKFNEKIYFRLKRMRCPSCMYGMNGSTHTEKFENDRGIKEIEILHDKEINDIEIVRTDIQKRHKIIPFQTSKADGLNAISAVNRIAEKKKEKEVVTIQEKILANFSDTCINFIREYFFLYNHTIFSPIKYMNIGLTQIRKDPRFIANASLKNTILSEVKTACDELLTAC
Ga0065181_1213835	Ga0065181_12138351	F000449	MKNKKAGGEDTSPPDLDQEYELRTSAPQEEMERYYARKKASLIRKLRQINKKIKKNIYNPYAGDDEKHKNAPD*
Ga0065181_1213835	Ga0065181_12138352	F038538	MQATMKNTKTPLTKDYKSETLGREILKKINLIGQKTYKLKKDVNGICGLVLSKPGATMFVEGHKAELWKEASDDFSQQWKEIAAEKYEVECMVHLMYD
Ga0065181_1215875	Ga0065181_12158751	F100366	MRKLDLKNYTISLPDEKGILRFTPYQFQNTLMDMLPHPRLGLNGPELLKAMEVVEEIEKAKTEVLLSEEHYQLILDTCKKFRGFTKYDAQFLKRIFNCPVVPDEDKGVDLSDNGKEKK*
Ga0065181_1221330	Ga0065181_12213301	F094906	PNTTTYFVIKAYTATENVQSAQYSVAVSNGDSKVYDVYMNIASGQIRLRFKYFVTSPPDNWEARCKKNGGSWNSWIVDPPSGQQYFTDYVGSGWQTGDQLDIDFYNPSNRSETNIQDTILYGNTCF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004108: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences