NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300004142

3300004142: Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10



Overview

Basic Information
IMG/M Taxon OID3300004142 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111384 | Gp0110934 | Ga0066638
Sample NameGroundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size349976090
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense4
Not Available8
All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → Thermococcus zilligii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDevelopment Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeaquifergroundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001003Metagenome / Metatranscriptome808Y
F002298Metagenome / Metatranscriptome573Y
F002651Metagenome539Y
F004515Metagenome434Y
F010074Metagenome / Metatranscriptome308Y
F014811Metagenome260Y
F016358Metagenome247Y
F039402Metagenome / Metatranscriptome164Y
F042954Metagenome / Metatranscriptome157Y
F068209Metagenome125Y
F069687Metagenome123Y
F094578Metagenome / Metatranscriptome106Y
F102531Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066638_1009426All Organisms → cellular organisms → Archaea2581Open in IMG/M
Ga0066638_1012897All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon2219Open in IMG/M
Ga0066638_1036173All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense1308Open in IMG/M
Ga0066638_1091277Not Available759Open in IMG/M
Ga0066638_1094132Not Available745Open in IMG/M
Ga0066638_1098001All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense726Open in IMG/M
Ga0066638_1098876All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → Thermococcus zilligii722Open in IMG/M
Ga0066638_1123237All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense627Open in IMG/M
Ga0066638_1124627Not Available622Open in IMG/M
Ga0066638_1124769All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense622Open in IMG/M
Ga0066638_1125902Not Available618Open in IMG/M
Ga0066638_1138161Not Available582Open in IMG/M
Ga0066638_1146002Not Available561Open in IMG/M
Ga0066638_1161173Not Available525Open in IMG/M
Ga0066638_1163791Not Available520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066638_1009426Ga0066638_10094264F094578MIKKERPKWPLQRLKGMYFAMHCWKCKKFELPVEEYKKGCEENIQKIIDNLGIKEMKFKEFNEIIKNSTFCKFEKRELEKRFKQVKETFAGNDKD
Ga0066638_1012897Ga0066638_10128973F094578MDNKKERPKWPLQRLKSMYFAMHCWKCKKFELPVEEYKKRCEENIQKIINNLEIKEMKFKEFNEIIKNSTFCKFERREFNNNCPICKELRVPRLVD*
Ga0066638_1036173Ga0066638_10361731F002651MKNICASVGAVPTTKKKEVEGEGGKYIRKENEVIFCLEEAPEY
Ga0066638_1091277Ga0066638_10912771F069687MEELAKKIESILSQFITEELGNRLSQFALISLKEIILNEIKSYKPK
Ga0066638_1094132Ga0066638_10941322F102531AGWTLGTYGGQTIPIQPQKTIAQINQEIDNLVARGVDELEAIRQVGSISIPNYATTPEQIAALRLADQARTADEILQCPYTWCRHNSAISDAILESRDYQPYRAAMTMQTTEGLSAGGHQTSAIIINGEPVFIDLTNNLIITGQQALEQVLINSEKQLTALEMIRLTTNNVWDVINLIPK
Ga0066638_1098001Ga0066638_10980012F004515MVQTIRSETLLPGQKMILLEKPLVLNRIFFSIRALADQSAWYQSKVSFDDPLFSSFYVLNGPGKYFEARGEGIFQGDVWVFNASDQNLQYTATEILI*
Ga0066638_1098876Ga0066638_10988761F042954MQDVRVRNGLYGFDFREVDLRRVEEEKERKTYNIKSLWQRSHEIINLAARGFKQTDIAEILGITPVCVSSTLNSELGQKKLSEIREFRDEEAKKTTEKIRVLTSKAIQTYHEIFDNEDGQATLKDRKGVADTVLLELSGLRAPTKIQSSSI
Ga0066638_1123237Ga0066638_11232371F010074ITIHPTFITKNVECSWCGAKFNEKIYFRQKRMRCPSCMWGMNGSTVAEKFENETQIKEEINDIEIVQTDIEKMQKIQAYEIIPFRTGKADSLNAISMVNWIAEKKKKDRVITIQEKILANFSNISVNFIREYFFIYNHTIFSAMKYMNIGLREIRKDPRFIANAALKNTVLSEVKTACDELLLACQQSNEHITALKLPQNQT*
Ga0066638_1124627Ga0066638_11246271F039402MSPLADYSNMEKEIKDAPEPRVLARGTEVKARIITVREGISEKNDAQWYQTVFDVPADLTALEFNDFFWDLADRDKLEPKNAARAMRKFKMFASAFSIDYTQPFSWTDDLIGRMGWLIVGIRKSEEYGDQNTVQKYLAKK*
Ga0066638_1124769Ga0066638_11247692F002651MKNIGASVSAVPTQEQKAEVEEVEGEGKKYFRKENEVIFC
Ga0066638_1125902Ga0066638_11259021F002298KASVGAVPTQEDKIKKGILNMTLKKIDNILEKSEDIDRMNLEFYAMVGKTCGPQTVFEQHRTTIKIDTFRRDIGKRWAENMRKREEIYEIIDMLYELTKNETENSDAERPKQMSWAEIRQKIQERMKKTLFR*
Ga0066638_1138161Ga0066638_11381611F014811KTLKEYSTSSPRSKFYNYVSIEIEPIPGKPCIILVKKGMEEGRKPAQILEQLDIFKNLSVPSAT*
Ga0066638_1146002Ga0066638_11460023F001003MEKYKKFTTENKKDFIFPHNLSAKEKDIYMYLFRLLREKINGGRYPEMDNGESIYSKSDMKSLIAKGIILFMPYKRGWVITIHPTFITKNVEC
Ga0066638_1161173Ga0066638_11611731F068209LRKTSLNLSDIGRLTLRQFTDLLKEIYYQESVEEYRNQHAIASLLAAIYNTIPRKAGHVPLQAKDFLSGDMPTRDGRQPSPVDELARKKGIIIPNN*
Ga0066638_1163791Ga0066638_11637912F001003MKTQKIMKKFKKFQIEYKKDFILPPNLFAKEKDIFVYLFQLLRKKIDRGIYPEVYNDEIIYTKSDLKSLISKGIILFARYKKGWVIT
Ga0066638_1164169Ga0066638_11641692F016358MIIMQMTVIVNIAQASKSFAKQSPAIKYATLKMTTSKSDIFVLPEWLG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.