NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004322

3300004322: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A



Overview

Basic Information
IMG/M Taxon OID3300004322 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110188 | Gp0091626 | Ga0066233
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22868546
Sequencing Scaffolds7
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001233Metagenome / Metatranscriptome741Y
F001346Metagenome / Metatranscriptome718Y
F001758Metagenome / Metatranscriptome640Y
F003269Metagenome / Metatranscriptome496Y
F008255Metagenome / Metatranscriptome336Y
F014854Metagenome / Metatranscriptome259Y
F016975Metagenome / Metatranscriptome243Y
F026580Metagenome / Metatranscriptome197Y
F030100Metagenome / Metatranscriptome186Y
F067247Metagenome / Metatranscriptome126Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066233_101355All Organisms → cellular organisms → Bacteria852Open in IMG/M
Ga0066233_102080Not Available733Open in IMG/M
Ga0066233_102119Not Available727Open in IMG/M
Ga0066233_103477Not Available614Open in IMG/M
Ga0066233_104017Not Available585Open in IMG/M
Ga0066233_104260Not Available573Open in IMG/M
Ga0066233_106069Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066233_101355Ga0066233_1013552F067247VKKLFSIGIVLALLVTFVVPVAIAAQDECCEWTPPNAVPLPDRTTKTLAGATMWTLLGVTDIMGKAVCATTGQMAANLGGWSDELGVIGVDVTVAALKGIGGLIDGVIGQFLPDFADLGAGVVDLINGIADALAGATEGEP
Ga0066233_102080Ga0066233_1020801F003269VLSGKDAGKRHRRVFAWLAGRWRKHWPKRAEKPHSKSSDREALDGPATRPETPLAVENSV
Ga0066233_102080Ga0066233_1020802F030100LAAVNRLSLVVSRIIPGDWGKVGSGWLAQPLLEHVEGHEDGGRIHQFLWRCSRIVSKREKGTARSGAMRNRSELSEVGRGSFGSG*
Ga0066233_102119Ga0066233_1021192F001233ERLASEISRIIPGDWGKVESGWLAWPLLSWTAGFGGGGRIHQFLWRCSRAVSNAKRNLAARSDKKPLRVG*
Ga0066233_103477Ga0066233_1034772F016975VAKTWKEIADVSWSGSQAGGATTSQSELKSLTRSSGGNALDGPATRPETPLAVENSVG
Ga0066233_104017Ga0066233_1040171F014854*DGQR*SKEKSQVVSRIIPGNWGKVEPGWLARPLLDRIGRFGGGGRIHQFLWSRSHAVSFAKRNLAARSDKKPFRVGSSSSGRFRAWVNRSYPEGKWLLLCISTGRVTLADSINRLKPPNESH*KVDKRSARTGKITQTRQIA*KTSERRRCYKRHRWPVSERQPES*
Ga0066233_104260Ga0066233_1042601F001758VTGERLGQAGWLSPSQAGSQGSGAEAGFTSSSGGVRAPSVYAKEGLNGEER*
Ga0066233_104260Ga0066233_1042602F026580MRNRSESSQVARAGFELGRIAVTQRVFGCYCASARADGSGGLRKEVSQMKDAERRDKLSVRAGEDTWCGQDP*
Ga0066233_104260Ga0066233_1042603F001346VVWAGPVKTFRKVGDVKNNTADLWTKGNLRVKRRDPWHRANALSKAAADLELNGEDADKKTQTCLDLVRKPVAQ
Ga0066233_106069Ga0066233_1060691F008255MIVQMQEFVADSTSALSSQVRKMRKESVETVREAAVDSAENLKSLKSPVRTLARSGIKLTGVSHTTVASLIELQSEVLTSAISDAALRLERAARADSVIDLVREQIEMIPATRTRIVEDAQRTASIFKHAGRDLRGVVTHLYEKVVEPTEAKAAPAKTAKR
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