Sample 3300004327

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300004327

3300004327: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2B

Overview

Basic Information
IMG/M Taxon OID	3300004327 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110188 \| Gp0091624 \| Ga0066231
Sample Name	Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2B
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26629410
Sequencing Scaffolds	3
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Sao Paulo State, Brazil
Coordinates	Lat. (^o)	-23.8553	Long. (^o)	-46.1394	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016975	Metagenome / Metatranscriptome	243	Y
F018005	Metagenome / Metatranscriptome	237	Y
F020700	Metagenome / Metatranscriptome	222	Y
F023129	Metagenome / Metatranscriptome	211	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066231_103869	Not Available	625	Open in IMG/M
Ga0066231_103951	Not Available	621	Open in IMG/M
Ga0066231_104969	Not Available	573	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066231_103869	Ga0066231_1038691	F020700	MAARHSLHLRFARFDPETSPSVFSDAAAGIAATSIRLNFTVLFQVVRPEKAR
Ga0066231_103951	Ga0066231_1039511	F023129	MKGNLRDKRRDPWHRANALSKAAADPALSGQDANKQQQTCLGLVRKP
Ga0066231_104969	Ga0066231_1049692	F016975	VVKTRRLITDVSWPGSQAGGATTSQSELKSLTQEFSSGNALDGPATRPKTPLAVENSVG
Ga0066231_106477	Ga0066231_1064771	F018005	EKALKSGIDLQEESVNLWKSLLTQLGSPEEFQAKLESMQSEAFPTARKRMEEFIELFNRSSNQTMELFEKSMKVYQAKSVTDAQRRLQDLMESSLETLRGNVQTALNTNAKIVSSWKDIVDRLKSSTKK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.