Sample 3300004534

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300004534

3300004534: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 58_HOW8 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300004534 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114290 \| Gp0111192 \| Ga0066528
Sample Name	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 58_HOW8 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	29213652
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	USA: Lake Washington, Seattle, Washington
Coordinates	Lat. (^o)	48.3807	Long. (^o)	-122.1599	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001904	Metagenome / Metatranscriptome	619	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066528_105901	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1069	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066528_105901	Ga0066528_1059011	F001904	MKSIIIALIAVLAFAALAVQAQSDFEIAALEVAGDCHPECRWQCDDPVCPAQCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKNDCPKCETVCAPANCRTQCEAPNAVCTPMCEATKCDWKCKKPVTCPKPKCELVCERPKCAAKKRAAGPSFIEVADKAEAPSCCPCSVQANVAAAMQQASKNSEVDEEMMPSFMEVVHSMKFKEATNPEAQCCPCSA*

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