Sample 3300004572

Overview

Basic Information
IMG/M Taxon OID	3300004572 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114290 \| Gp0111162 \| Ga0066498
Sample Name	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 14_LOW5 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	23263978
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	USA: Lake Washington, Seattle, Washington
Coordinates	Lat. (^o)	48.3807	Long. (^o)	-122.1599	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F006508	Metagenome / Metatranscriptome	371	Y
F053640	Metagenome / Metatranscriptome	141	Y
F082737	Metagenome / Metatranscriptome	113	Y

Family

Category

Number of Sequences

3D Structure?

F001633

Metagenome / Metatranscriptome

660

F006508

Metagenome / Metatranscriptome

371

F053640

Metagenome / Metatranscriptome

141

F082737

Metagenome / Metatranscriptome

113

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066498_100051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	566	Open in IMG/M
Ga0066498_109295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	752	Open in IMG/M
Ga0066498_147366	Not Available	530	Open in IMG/M
Ga0066498_159686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	500	Open in IMG/M
Ga0066498_160603	Not Available	711	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0066498_100051

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia

566

Open in IMG/M

Ga0066498_109295

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

752

Open in IMG/M

Ga0066498_147366

Not Available

530

Open in IMG/M

Ga0066498_159686

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei

500

Open in IMG/M

Ga0066498_160603

Not Available

711

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0066498_100051	Ga0066498_1000511	F053640	RSAAALKNVTESTAGIIPGDRGMVGDNWCRPPLQAAKVVERHISPVPLAGVVSGQYTHEVGTERRGAIRNRVEPSQAHGAFRPVRRRSYPRGFWLLLRRPERSHGFRRANPAKRPRSQHERGAQGNRDGGEGAGLAKPVKPPQWGGAKNRVTPLQKRKQP*
Ga0066498_109295	Ga0066498_1092951	F001633	TRLGALAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLLSEASSPGSDAPCRERRAGRGADTPAIFIVSRLHPYHEDGTGFWPAVGPALRV*
Ga0066498_147366	Ga0066498_1473661	F082737	SLQLAPQPACQV*ACHIQPAGRCSRLAPRPRYFSVGASMLSGPPASLPVRSQNLETDFHSPTKTNLLPDRRGGVRVPALPLQLCGTLAVSPVRSDLHPRPVSRTAWDFYDQNPLLPDPAPLQPASLNRCSPSGLFALPDHSTQSRWPTGNLLPATPDLPSLPTGGRIRYQHQRIIV
Ga0066498_159686	Ga0066498_1596861	F001633	LAFAGGVLPDATLRGMRMSRSHGGTVLAVTGRDLSSEASSPGSDVPCRERRAGRGADTPAIFIVSRRHPYHGDGTGFWPIVGPALRV*
Ga0066498_160603	Ga0066498_1606033	F006508	VVLANAPSKAVADQYQVVKTRSQSYRRVLTWFASRWRNHQPKRAEKPHSKFSVVRRWTALHEAEDPLAVENSVGK

Scaffold ID

Protein ID

Family

Sequence

Ga0066498_100051

Ga0066498_1000511

F053640

RSAAALKNVTESTAGIIPGDRGMVGDNWCRPPLQAAKVVERHISPVPLAGVVSGQYTHEVGTERRGAIRNRVEPSQAHGAFRPVRRRSYPRGFWLLLRRPERSHGFRRANPAKRPRSQHERGAQGNRDGGEGAGLAKPVKPPQWGGAKNRVTPLQKRKQP*

Ga0066498_109295

Ga0066498_1092951

F001633

TRLGALAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLLSEASSPGSDAPCRERRAGRGADTPAIFIVSRLHPYHEDGTGFWPAVGPALRV*

Ga0066498_147366

Ga0066498_1473661

F082737

SLQLAPQPACQV*ACHIQPAGRCSRLAPRPRYFSVGASMLSGPPASLPVRSQNLETDFHSPTKTNLLPDRRGGVRVPALPLQLCGTLAVSPVRSDLHPRPVSRTAWDFYDQNPLLPDPAPLQPASLNRCSPSGLFALPDHSTQSRWPTGNLLPATPDLPSLPTGGRIRYQHQRIIV

Ga0066498_159686

Ga0066498_1596861

F001633

LAFAGGVLPDATLRGMRMSRSHGGTVLAVTGRDLSSEASSPGSDVPCRERRAGRGADTPAIFIVSRRHPYHGDGTGFWPIVGPALRV*

Ga0066498_160603

Ga0066498_1606033

F006508

VVLANAPSKAVADQYQVVKTRSQSYRRVLTWFASRWRNHQPKRAEKPHSKFSVVRRWTALHEAEDPLAVENSVGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004572: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 14_LOW5 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences