NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004817

3300004817: Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - SAL2 dirigido Enero 2015



Overview

Basic Information
IMG/M Taxon OID3300004817 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114557 | Gp0113150 | Ga0070915
Sample NameHypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - SAL2 dirigido Enero 2015
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Alicante
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5923250
Sequencing Scaffolds8
Novel Protein Genes10
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea1
Not Available3
All Organisms → Viruses → environmental samples → uncultured virus4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Lake → Hypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hypersaline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationSpain
CoordinatesLat. (o)38.19317Long. (o)-0.59268Alt. (m)N/ADepth (m)58.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054456Metagenome140N
F062297Metagenome131N
F065465Metagenome127N
F072017Metagenome121Y
F076468Metagenome118N
F088354Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0070915_100151All Organisms → cellular organisms → Archaea1494Open in IMG/M
Ga0070915_100592Not Available868Open in IMG/M
Ga0070915_101461All Organisms → Viruses → environmental samples → uncultured virus607Open in IMG/M
Ga0070915_101507All Organisms → Viruses → environmental samples → uncultured virus599Open in IMG/M
Ga0070915_101851All Organisms → Viruses → environmental samples → uncultured virus544Open in IMG/M
Ga0070915_101937All Organisms → Viruses → environmental samples → uncultured virus530Open in IMG/M
Ga0070915_102054Not Available515Open in IMG/M
Ga0070915_102130Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0070915_100151Ga0070915_1001513F072017MSLNQTPSLESQSDTNVKRIVHQHDEIHQLTQEHIDVFDEDDRLLDFYQWQQIIRSSETTVRRLAYAETGVGQ*
Ga0070915_100592Ga0070915_1005922F065465MTEDITVVCECDAKDEARSMGYRRYADMPAADIVAAWPVHYTEHGSWDSHILPTLRCLAGYADRGYGSYQERQDVALIQDGDEADMPADAIILDSGHLLDDIIVSWQDGAHTAVTDTLRQSDSYSLEDIQR*
Ga0070915_101461Ga0070915_1014612F088354MTDTPRAELDVDRFETTTVNANGQVYLGRDLEGTKVHVAVEIVEDADEHEQEDPDE*
Ga0070915_101507Ga0070915_1015072F072017MSLNQTPSLESQGDTNLKSTVHKHDAIHAVTQEHIDVFDEDDRLLDFYEWQQIIRSSETTVRRLAYSEIEEGVDQ*
Ga0070915_101549Ga0070915_1015491F076468MTNLEEIDTKAVWLSGRYWRRESKVVHIDGDCDQLDSCDNPRGPVDPSVLQPDMAVCKRCDPTEPDQYGGSGTSLAHRLRHGDLQDATIDSDSVGGDE*
Ga0070915_101552Ga0070915_1015522F076468MTKLEEIDTKAVWLSGRYWRREHKVVHIDGDCDQLDACDNPRGPVDPDVLAGDMSVCKRCDPNEPDRYGGTTGTSLAHRLRDGDLQDATLDCDTGGDE*
Ga0070915_101851Ga0070915_1018511F065465MSDTITVVCECDAKDEAHSMGYRRYADMAAADIVAAWPLEYASHGSWDSHILPTLRCLSGYADGGYGTYQQRQDIALIQDGDEADMPADAVVLDSGHLLDDMIDAWHSGRHQAITDTLRQSDEHSLEDIQR*
Ga0070915_101937Ga0070915_1019371F062297MSMDDLERCPRRYTVLAERVEDGRVVEQSVTGQSRAEELFARWDEGEQLCNLRVKCISAPMDDVTRHFEHDWPPTNNSPVSSDGGSTESATKGWETR*
Ga0070915_102054Ga0070915_1020542F065465MTEDITVVCECDVLEEARSMGYRRYADMTAADIVAAWPVHYTEHGSWDSHILPTLRCLAGYGDRGYGTYQERQDVALIQDGDEADMPADAIILDSGHLLDDLIDAWHSGRHQAITDTLRQ
Ga0070915_102130Ga0070915_1021301F054456MYEPTLDFETDTEKLTPQQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAEGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEAINFLSRTMPQFEQSEGEPLIEDEPPKIHKDELSIMRWGVDPKPEDDFL*
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