NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300004819

3300004819: Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - HQ1 dirigido Enero 2015



Overview

Basic Information
IMG/M Taxon OID3300004819 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114557 | Gp0113149 | Ga0070914
Sample NameHypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - HQ1 dirigido Enero 2015
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Alicante
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size7447736
Sequencing Scaffolds14
Novel Protein Genes15
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
All Organisms → Viruses → environmental samples → uncultured virus7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → unclassified Haloferuviridae → environmental Halophage eHP-421
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Lake → Hypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hypersaline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationSanta Pola Alicante
CoordinatesLat. (o)38.19317Long. (o)-0.59268Alt. (m)N/ADepth (m)56.6
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054456Metagenome140N
F062297Metagenome131N
F066493Metagenome126Y
F072017Metagenome121Y
F076468Metagenome118N
F088354Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0070914_100020Not Available6992Open in IMG/M
Ga0070914_100050All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria4311Open in IMG/M
Ga0070914_100385All Organisms → Viruses → environmental samples → uncultured virus1377Open in IMG/M
Ga0070914_100543All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → unclassified Haloferuviridae → environmental Halophage eHP-421166Open in IMG/M
Ga0070914_100828Not Available925Open in IMG/M
Ga0070914_100833All Organisms → Viruses → environmental samples → uncultured virus922Open in IMG/M
Ga0070914_100853All Organisms → Viruses → environmental samples → uncultured virus912Open in IMG/M
Ga0070914_100877All Organisms → Viruses → environmental samples → uncultured virus894Open in IMG/M
Ga0070914_100949All Organisms → Viruses858Open in IMG/M
Ga0070914_101104All Organisms → Viruses → environmental samples → uncultured virus795Open in IMG/M
Ga0070914_101241All Organisms → Viruses → environmental samples → uncultured virus748Open in IMG/M
Ga0070914_101926Not Available576Open in IMG/M
Ga0070914_101978Not Available568Open in IMG/M
Ga0070914_102125All Organisms → Viruses → environmental samples → uncultured virus545Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0070914_100020Ga0070914_1000202F066493MSEREWHDGVVDVADELVQEHSAEGAIERLQSRRQTSSDELQHRCTEAIAYIRREVQADA
Ga0070914_100050Ga0070914_1000502F072017MSKTTTSSLDTHSDTDIKSIVHQHDEIHQLTQEHIDVLDEDDRLLDFYEWQQIIRASETTVRRLAYDEAGVEQ*
Ga0070914_100385Ga0070914_1003852F072017MSLNQTPSLKPQSDTNVKSTVHKHDAIHRLTQEHIDVFTADDRLLDFYEWQQVIRSSETTVRRLAYDEVQQ*
Ga0070914_100543Ga0070914_1005431F054456MAYNPNLDFSTDTEQLSPQQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAEGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTMPQFEQSEGEALIEDEPPKIHKDELSIMRWGVDPKPEDDFI*
Ga0070914_100828Ga0070914_1008282F054456MYEPTLDFSTDTEQLSPAQAHDRWEDVTNLDTPELQRLEDSRRNELYLDAAEGNQGDDNPPIPGGPLADAQHLASTPRDEWGPDERAEAEEALNFLSRTLPQFEQSEGEPLIEGEPPKIHKDELSIMRWGVDPAPEDDFL*
Ga0070914_100833Ga0070914_1008333F062297MSMDDLELPPRRYVVLAERVEDGRVVEQAVTGQSRAEELFERWDEGDQLCNLRVKAISAPMDDVTRHFEHDWPPTNNSPVSSDGATKGWETR*
Ga0070914_100853Ga0070914_1008532F072017MSLNQTPSLEPQSDTNIKSTVHKHDAIHRLTQEHIDVLDGDDRLLDFYEWQQIIRASETTVRRLAHAEIEIEEGVDQ*
Ga0070914_100877Ga0070914_1008771F072017MSKTTTSSLKTQSDTNIKSTVHKHDEIHAVTQEQIDVFDEDDRLLDFYQWQQIIRASETTVRRLAYDEVQQ*
Ga0070914_100949Ga0070914_1009491F088354MTDTPRAELDVDRFETTTVNANGQVYLGRDLEGVKVHVAIEIVTDDDEQEDPE*
Ga0070914_101104Ga0070914_1011043F088354MTDTPRAELDVDRFETTTVNANGQVYLGRDLEGVKVHVAVEIVDEQPD*
Ga0070914_101109Ga0070914_1011092F076468MTKLEEIDTKAVWLSGRYWRREHKVVHIDGDCDQLDACDNPRGPVDPDVLAGDMSVCKRCDPNEPDRYGGTTGTSLAHRL
Ga0070914_101241Ga0070914_1012412F088354MTDMPRAQLDVDRFETAVVNSNGQIYLGRDLEGVKVHVAIEIVEDADEN*
Ga0070914_101926Ga0070914_1019261F054456MAYNPNLDFETDTEQLSPAQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEAINFLSRTLPQFEQSEGEPLIEDESPKIHKDELSIMRWGVDPAPEDDFL*
Ga0070914_101978Ga0070914_1019781F054456MYEPTLDFETDTEQLSPQQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTLPQFEQSEGEPLIEDESPKIHKDELSIMRWGVDPNPEDDFL*
Ga0070914_102125Ga0070914_1021252F088354MTDTPRAELDVDRFETTTVNANGQIYLGRDLEGAKVHAAIEIVTDADEN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.