NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005056

3300005056: Mid-Atlantic Ridge North Pond Expedition - Sample 1383C Shallow



Overview

Basic Information
IMG/M Taxon OID3300005056 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114576 | Gp0113269 | Ga0071102
Sample NameMid-Atlantic Ridge North Pond Expedition - Sample 1383C Shallow
Sequencing StatusPermanent Draft
Sequencing CenterThe Marine Biological Laboratory
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size279233715
Sequencing Scaffolds7
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea3
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine Subseafloor Aquifer → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.8Long. (o)-46.05Alt. (m)N/ADepth (m)70 to 146
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F000874Metagenome / Metatranscriptome851Y
F003081Metagenome / Metatranscriptome508Y
F006552Metagenome370Y
F008692Metagenome / Metatranscriptome329Y
F012125Metagenome283Y
F018935Metagenome / Metatranscriptome232Y
F051179Metagenome / Metatranscriptome144Y
F096054Metagenome / Metatranscriptome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0071102_1011635Not Available3232Open in IMG/M
Ga0071102_1012396All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea3068Open in IMG/M
Ga0071102_1057746Not Available1037Open in IMG/M
Ga0071102_1148767All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea566Open in IMG/M
Ga0071102_1159825All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea541Open in IMG/M
Ga0071102_1175302All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon510Open in IMG/M
Ga0071102_1177610All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0071102_1011635Ga0071102_10116355F012125MSDTRYSVMHPDSGKDSFFPAGKPKNLPRFYFLVLAGIFLMIFMFLWFD*
Ga0071102_1012396Ga0071102_10123965F003081MREEMFEETRFGAEVFYMHVRGVDVIFVLTYLHILKKIYLKNYVTADGDG*
Ga0071102_1057746Ga0071102_10577461F000874MKILMILATGAIITFPMDKSIKPDCFSQGYAILEKLATYHGPEEKGKDQGWVLNKSNL
Ga0071102_1079652Ga0071102_10796521F096054MDLNVYEDDDDETLHRKLVAAKIARKRAEEDMKLLTNRIGLLKQEEQKVTCSLV*
Ga0071102_1148767Ga0071102_11487671F051179MEVDFNLKKVFDMPNIEQLIFFYINFDKCRREIIQFEDAKRTSHAGAKHPKDSKKEALNLMRCHSNNLTFEPVCLDSFNDARECLFKLDGQMRLCQNELNLFEECTHDPVRFDKFQKLATPTQAMPKDFFATIIRKDYFN*
Ga0071102_1159825Ga0071102_11598251F018935AKMRLRNTHSYYDYIYKYSARFLNKYQSGAHFHLGRGSGFLELLRLKAARMKGNRNWQWFDVRYGFKFVYVLYIPQMIFAIVCYLLTPVWRRIDERYHLRYGDGEEDDIEDVEPFVTYQPRKKPMTRRKYADAIKLVYDDKEEMDYAPEQPLRYR*
Ga0071102_1168292Ga0071102_11682921F000060RIKEIMAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLEEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNIGREIQAEMIANGRPSPAKLRNAMSNPYTWNAL
Ga0071102_1175302Ga0071102_11753022F008692SNISKSIRNKMKGNMTKKKRKQTEEEMYMPTSEEEFQADLDAQDMRYLHYCREQEEMYNDPVMNWSGLR*
Ga0071102_1177610Ga0071102_11776102F006552LGKKVLIV*ENAINQYPTVWEATPKVEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDILNNVGLPVFLNPTYEIVPITTPTKSPTKFRIISRKNSNYADSATVLNKVSEQVF*
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