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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005064 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114530 | Gp0112752 | Ga0070450 |
| Sample Name | Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 01 soap2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Center for Advanced Technologies in Genomics, Sao Paulo University |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 243710731 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sao Paulo Zoo, Brazil | |||||||
| Coordinates | Lat. (o) | -23.651072 | Long. (o) | -46.620675 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046478 | Metagenome / Metatranscriptome | 151 | N |
| F078046 | Metagenome | 116 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0070450_1488553 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 518 | Open in IMG/M |
| Ga0070450_1520845 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 614 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0070450_1488553 | Ga0070450_14885531 | F046478 | MLAADVNCFWTLEQDQESYNREVYLPDAYIEVIINVGAPLLLESEYGMLELPRAFVNPLQHKPLRIRATGLCQLLSMQLYPWALKPILNIDATPSTVHVIGLDAGWQHFADELRRI |
| Ga0070450_1520845 | Ga0070450_15208451 | F078046 | MFDMSADCVQNVFEQLKDRYELVLTSAAALDEGFTVDCPILVGKAHGQIVELYEAGGEFVLDVMDAEQTKGTHWHPYDVKDAAHDIAEFMEGKSDYVLSPFPKA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |