NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005298

3300005298: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C



Overview

Basic Information
IMG/M Taxon OID3300005298 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0060837 | Gp0052398 | Ga0071330
Sample NameHot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size150187695
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → unclassified Archaeoglobus → Archaeoglobus sp.1
All Organisms → cellular organisms → Archaea3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1
All Organisms → cellular organisms → Bacteria1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Great Boiling Spring, Nevada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.71458Long. (o)-119.369659Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006925Metagenome362Y
F008219Metagenome337Y
F019254Metagenome231Y
F027047Metagenome196Y
F036249Metagenome / Metatranscriptome170N
F038537Metagenome165Y
F064214Metagenome129Y
F074155Metagenome120Y
F098235Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0071330_1032330All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3729Open in IMG/M
Ga0071330_1039367All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium796Open in IMG/M
Ga0071330_1040572All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon835Open in IMG/M
Ga0071330_1041045All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → unclassified Archaeoglobus → Archaeoglobus sp.23917Open in IMG/M
Ga0071330_1061031All Organisms → cellular organisms → Archaea17692Open in IMG/M
Ga0071330_1063198All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota23620Open in IMG/M
Ga0071330_1069753All Organisms → cellular organisms → Archaea7321Open in IMG/M
Ga0071330_1070450All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1325Open in IMG/M
Ga0071330_1070915All Organisms → cellular organisms → Archaea47159Open in IMG/M
Ga0071330_1074338All Organisms → cellular organisms → Bacteria16200Open in IMG/M
Ga0071330_1088330All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon553Open in IMG/M
Ga0071330_1115988Not Available9087Open in IMG/M
Ga0071330_1121017Not Available1014Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0071330_1032330Ga0071330_10323304F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNPDNPQSFDAAKFLTTLIWGIIVGAILQFSGIPITEQSVEEQFVAYAGLIAITENIIKAVIRAVKR*
Ga0071330_1039367Ga0071330_10393671F036249AGVSNFNAPMSIPNDTGLSAVYTWGWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVVANDLFSNTDATLGKIAGIPYAVDRPTTTPNSFGGISRSNTTNPWWRCVVVDANNNPLTLQWLAQAYNLATENGGISPDIIVMPTDLFTAFEAQLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTVFIINSKDLMLVSQTDRPSAEPVEFPDRLVRGYKHGWALALVAKRLNSHARINNITP*
Ga0071330_1040572Ga0071330_10405721F038537MRRTVYFWRGLYPLLRRFCREHNVSVNKIVNLAVQQFLGGCDVVELRLQARLDGLLREEAQLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDAQRPLKALNPREERVFRRIVARREQIAREIAEIEEMLLRDVKPFRLKPDLRGSRSRRRLCDKNKAPEPKGRSVIGSG*
Ga0071330_1041045Ga0071330_10410454F027047MVEMDWSSLGIAVLSAVIYSLSMYVKKHLNPDNPQSFDKAKFLTTLIWGIIIGVVLQLSGVEITERTVEEQFVAYAGLIAITENIIKAVIRVTKIFTSFKEKNGGWSDGC*
Ga0071330_1061031Ga0071330_10610314F038537MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQSFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTHLLDPQRPLKALNPREERVFRKIAARRERIAREIAEIQEQLLRDVKPFRLKPDLRLSRSRARGKNKLKGGEKPNGETA*
Ga0071330_1063198Ga0071330_106319822F064214MSGKGDLKVLVKSAEDLAYALRDTIDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGRSK*
Ga0071330_1069753Ga0071330_10697531F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGVILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
Ga0071330_1070450Ga0071330_10704502F008219MPKYLIEIILVVEAKNPQEARKIADYILNLPIPDKNIENAIETMRCEEVVQIKNPRT*
Ga0071330_1070915Ga0071330_107091534F027047MELGSLGIAVLSAVVYSLSMYVKKHLNPNSPQSFDVAKFITTLIWGVIIGILLQAFGVPVTEQAVEEQFVAYAGIIAITENIVKTIIRVIRR*
Ga0071330_1074338Ga0071330_107433818F019254MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVEDLPLF*
Ga0071330_1088330Ga0071330_10883301F074155VENSVDYVPFPEHESFEGEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADFTGKLARKIVAFKLLTCQTVNANVGDAVVAYAIEKFGLKVKPPDLKADADDLELTRMLDKVKDKWNPRAKNRILA
Ga0071330_1115988Ga0071330_11159886F006925LAVEVSVLENFGREAELRKKWMRMWERLGVRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNR*
Ga0071330_1121017Ga0071330_11210171F098235MIWGCLVRKGYRNLSIPEELYLELERFFKDSKGRYVSISEIVRVAIREFLDRQKPKTA*
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