Sample 3300005369

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300005369

3300005369: Human periodontal pocket microbial communities from Stanford, California, USA - TM7c

Overview

Basic Information
IMG/M Taxon OID	3300005369 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0055743 \| Gp0050999 \| Ga0074216
Sample Name	Human periodontal pocket microbial communities from Stanford, California, USA - TM7c
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	474179
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Periodontal Pocket Microbial Communities From Stanford, California, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Periodontal Pockets → Human Oral → Human Periodontal Pocket Microbial Communities From Stanford, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	Stanford, California, USA
Coordinates	Lat. (^o)	37.429308	Long. (^o)	-122.169514	Alt. (m)	N/A	Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095633	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0074216_1121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4070	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074216_1121	Ga0074216_11212	F095633	MRNCENFTEVGRGEGLTEGELRTMGTLAMKATEELKKTTIRKEAVLLGDVPFDSWDEFAKAVQEMAGYSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFINLSRTRCVVDADRSHKSYKFTCPALKKYPSGELYPIREVYVISAIDANGSQEVDFKIIQGGLN*

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