Sample 3300005482

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300005482

3300005482: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300005482 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111640 \| Ga0068678
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26706898
Sequencing Scaffolds	16
Novel Protein Genes	18
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → unclassified Anaerolinea → Anaerolinea sp. 4484_236	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F015737	Metagenome / Metatranscriptome	252	N
F061617	Metagenome / Metatranscriptome	131	N
F065815	Metagenome / Metatranscriptome	127	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F081941	Metagenome / Metatranscriptome	114	N
F092122	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068678_100348	Not Available	776	Open in IMG/M
Ga0068678_100504	Not Available	3367	Open in IMG/M
Ga0068678_104739	Not Available	2157	Open in IMG/M
Ga0068678_107163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	549	Open in IMG/M
Ga0068678_107646	Not Available	562	Open in IMG/M
Ga0068678_108724	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
Ga0068678_108789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	711	Open in IMG/M
Ga0068678_108985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → unclassified Anaerolinea → Anaerolinea sp. 4484_236	1243	Open in IMG/M
Ga0068678_109996	Not Available	567	Open in IMG/M
Ga0068678_111514	Not Available	556	Open in IMG/M
Ga0068678_112198	Not Available	771	Open in IMG/M
Ga0068678_125744	Not Available	511	Open in IMG/M
Ga0068678_137889	Not Available	920	Open in IMG/M
Ga0068678_144302	Not Available	555	Open in IMG/M
Ga0068678_151749	Not Available	3635	Open in IMG/M
Ga0068678_152330	All Organisms → cellular organisms → Bacteria	2453	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068678_100348	Ga0068678_1003481	F081941	SGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0068678_100504	Ga0068678_1005044	F002970	MSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIIPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSI*
Ga0068678_100504	Ga0068678_1005045	F005302	MAHFGVIQGLYAGNFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYNETTNSASNAIYDHFESPTPMLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068678_104739	Ga0068678_1047391	F073601	AGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRTLPVEKRALAGMGVLLQQE*
Ga0068678_107163	Ga0068678_1071631	F005631	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068678_107646	Ga0068678_1076461	F073601	AGCPLLGVSLALGRAMLQAKATCLVMVLPSKRREGQRMFWVLHFAWCCAIKIMECGSIIRPLPVEKKAFVGMGVLLQQE*
Ga0068678_108724	Ga0068678_1087243	F073601	MSLALGRAMLQAKATCLVIMVLPAKRREGQRMFWVLHFAWRCAIVKIVACGSIIRTLLVEKKALAGMGVLLQQG*
Ga0068678_108789	Ga0068678_1087891	F005631	MKLSTSVDIDNALRKLVPQTARIESALDAGAAAAHGVMQIYPPPPAGSRYQRTGNLRQKLRIKKLSRTTRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068678_108985	Ga0068678_1089851	F073601	LQAKATCLVMVLPAKRREGQRMFWRLHFAWRCAIKIMACGRIIRTLPVEKKAFVGMGVLLQQG*
Ga0068678_109996	Ga0068678_1099962	F073601	LQAKATCLVMALPSKRREGQRMFWRLHFAWRCAIKIMACGSIIRTLLVEQKALAGMGVLLQQG*
Ga0068678_111514	Ga0068678_1115141	F092122	MFNKLLRHLGISPKPEEAQGFDNPDGVEVRVTIEIAKEAMKKLIDSTLAAVSNMREMVLSVGLNPLPEVMQKAYEGLRFVIGWLTT
Ga0068678_112198	Ga0068678_1121981	F002229	LLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0068678_112198	Ga0068678_1121982	F002795	MATSGLTLRGMVASYREFASRRDGRTYRVITVFGDLVLDGVILCQVDGYDVFVDSPGYTRGEMVELPARLQFVRDSSGRPAVRLYVDEGVR*
Ga0068678_125744	Ga0068678_1257441	F061617	ANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLVICGLLWYLNVFDLQTVVGQPVSHQSEQLTALDLIRQLNSNTTSQANTTDEQTANWQSLNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNSTEANKLAQAAN
Ga0068678_137889	Ga0068678_1378892	F065815	PNKPMQPETNNSNPQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLIGLILGMYWLVSNFVNYLNITFWLK*
Ga0068678_144302	Ga0068678_1443021	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0068678_151749	Ga0068678_1517492	F073593	LLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPGQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0068678_152330	Ga0068678_1523304	F015737	MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWSNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNEKIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*

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