NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005493

3300005493: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005493 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111634 | Ga0068672
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size57013531
Sequencing Scaffolds13
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Microgenomates1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004307Metagenome / Metatranscriptome444Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F007404Metagenome / Metatranscriptome351Y
F013050Metagenome / Metatranscriptome275Y
F064295Metagenome / Metatranscriptome128N
F065815Metagenome / Metatranscriptome127N
F073593Metagenome / Metatranscriptome120N
F073601Metagenome / Metatranscriptome120Y
F081941Metagenome / Metatranscriptome114N
F082732Metagenome / Metatranscriptome113N
F097407Metagenome / Metatranscriptome104N
F098323Metagenome / Metatranscriptome104Y
F101227Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068672_1001298Not Available521Open in IMG/M
Ga0068672_1001942Not Available632Open in IMG/M
Ga0068672_1005229Not Available1921Open in IMG/M
Ga0068672_1007225All Organisms → cellular organisms → Bacteria3146Open in IMG/M
Ga0068672_1013164All Organisms → cellular organisms → Bacteria1264Open in IMG/M
Ga0068672_1013233All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium830Open in IMG/M
Ga0068672_1017709All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Microgenomates3722Open in IMG/M
Ga0068672_1019413Not Available640Open in IMG/M
Ga0068672_1022139Not Available3334Open in IMG/M
Ga0068672_1077378Not Available539Open in IMG/M
Ga0068672_1091357Not Available531Open in IMG/M
Ga0068672_1100707Not Available1338Open in IMG/M
Ga0068672_1104398Not Available660Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068672_1001298Ga0068672_10012981F081941FHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVL
Ga0068672_1001942Ga0068672_10019421F004307MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGAPQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPARRLRQRKEATIDEVPF*
Ga0068672_1005229Ga0068672_10052291F065815PETNNPNPQANQPTKPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068672_1005691Ga0068672_10056911F098323MLKNKSWILLVIFALFGFITTSIPVWTQENTTTQFDNTILAKNQQPVVPIGKADTSVVPACQNLINEIVKCPSGNGTCVAEKLRKDNKLTENTKRCLGLNSNNLNENQKLDLINKVCLVLPAISSSDRIFFCQACIGRGVKKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQN
Ga0068672_1007225Ga0068672_10072251F101227TPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*
Ga0068672_1013164Ga0068672_10131641F005631KLLPQTARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068672_1013164Ga0068672_10131643F082732MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLMLRTNAAELALPVLEQDQTPDVESSALVGGVRLIWREQSAE
Ga0068672_1013233Ga0068672_10132331F082732MTEIVMNQTELAAEIAARLRDEVAAAVKAQRVGVATELDEEGADVGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQDQTPDVESSALVGGVRLIWREQSAE
Ga0068672_1017709Ga0068672_10177092F073593MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFVTLLINAAINLIVESAFPKIGTSQCPPEQVVRSNIFGDYCINLNINPVIDFAIVVINSLLLPASAIIAVLFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0068672_1019413Ga0068672_10194131F073601LQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAIEIMECGNIIRTLPVEKKALVGMGVLLQQE*
Ga0068672_1022139Ga0068672_10221394F002970MSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIVPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068672_1022139Ga0068672_10221395F005302MAHFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068672_1022139Ga0068672_10221396F064295MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEV
Ga0068672_1077378Ga0068672_10773781F004307GIMFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVISAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF*
Ga0068672_1091357Ga0068672_10913571F007404MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFE
Ga0068672_1100707Ga0068672_11007072F097407MSSDFPSLKEEYHHLYEYVSTLAWMQYEQMKKKGKEYTGYVYFFGRTVHRLLHPLYFFHQTEEPKFWFEEQTFDPNNPAETFPTWEAKKAYLLVRFREKKFEIYDANFSRKVLSRYNHQIIQWLVKNNYHRLIEFDRCLGFYLDILNWTEEHFISFYENRLVNLLVTDYSPKTLSTTESWCQVV*
Ga0068672_1104398Ga0068672_11043982F013050MSKGKQPRASVNKVPKLLLSEIKVVYVLNGQEMGLEAAIF*
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