NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005737

3300005737: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T14



Overview

Basic Information
IMG/M Taxon OID3300005737 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114816 | Gp0117153 | Ga0076927
Sample NameSeawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T14
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Wisconsin, Madison
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67799163
Sequencing Scaffolds31
Novel Protein Genes34
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available15
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1
All Organisms → Viruses → Predicted Viral7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
unclassified Hyphomonas → Hyphomonas sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED371

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Degradation Of Oil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → mesocosm → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F004688Metagenome / Metatranscriptome428Y
F006866Metagenome / Metatranscriptome363N
F008134Metagenome / Metatranscriptome338Y
F010392Metagenome / Metatranscriptome304Y
F011539Metagenome290Y
F011888Metagenome / Metatranscriptome286N
F012719Metagenome / Metatranscriptome278Y
F015990Metagenome250N
F029711Metagenome / Metatranscriptome187N
F031527Metagenome / Metatranscriptome182Y
F033221Metagenome / Metatranscriptome178Y
F037490Metagenome / Metatranscriptome168Y
F037686Metagenome167Y
F038682Metagenome / Metatranscriptome165Y
F042572Metagenome / Metatranscriptome158Y
F047366Metagenome / Metatranscriptome150N
F052541Metagenome / Metatranscriptome142Y
F052658Metagenome / Metatranscriptome142Y
F053219Metagenome / Metatranscriptome141Y
F056526Metagenome / Metatranscriptome137Y
F058106Metagenome135N
F058520Metagenome135N
F061778Metagenome131N
F061808Metagenome131N
F063076Metagenome / Metatranscriptome130Y
F070007Metagenome / Metatranscriptome123N
F073436Metagenome / Metatranscriptome120Y
F074032Metagenome120N
F083372Metagenome113N
F093722Metagenome106N
F095310Metagenome / Metatranscriptome105N
F098208Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0076927_102152Not Available1977Open in IMG/M
Ga0076927_107465All Organisms → cellular organisms → Bacteria795Open in IMG/M
Ga0076927_108912All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica2587Open in IMG/M
Ga0076927_111024All Organisms → cellular organisms → Bacteria3123Open in IMG/M
Ga0076927_115402All Organisms → Viruses → Predicted Viral3059Open in IMG/M
Ga0076927_117065Not Available525Open in IMG/M
Ga0076927_122203All Organisms → Viruses → Predicted Viral2086Open in IMG/M
Ga0076927_123383All Organisms → Viruses → Predicted Viral1247Open in IMG/M
Ga0076927_123671All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium543Open in IMG/M
Ga0076927_123851Not Available1128Open in IMG/M
Ga0076927_126654Not Available2663Open in IMG/M
Ga0076927_126910All Organisms → Viruses1312Open in IMG/M
Ga0076927_127755All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1927Open in IMG/M
Ga0076927_130208Not Available2742Open in IMG/M
Ga0076927_133029All Organisms → Viruses → Predicted Viral2411Open in IMG/M
Ga0076927_133866All Organisms → Viruses → Predicted Viral3208Open in IMG/M
Ga0076927_135960Not Available577Open in IMG/M
Ga0076927_140289Not Available946Open in IMG/M
Ga0076927_142121All Organisms → Viruses → Predicted Viral1225Open in IMG/M
Ga0076927_142198unclassified Hyphomonas → Hyphomonas sp.586Open in IMG/M
Ga0076927_143239Not Available621Open in IMG/M
Ga0076927_145479Not Available823Open in IMG/M
Ga0076927_145973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37580Open in IMG/M
Ga0076927_146899Not Available524Open in IMG/M
Ga0076927_147169Not Available651Open in IMG/M
Ga0076927_150038Not Available660Open in IMG/M
Ga0076927_150697Not Available739Open in IMG/M
Ga0076927_151582Not Available860Open in IMG/M
Ga0076927_152427Not Available629Open in IMG/M
Ga0076927_153049All Organisms → cellular organisms → Bacteria741Open in IMG/M
Ga0076927_169571All Organisms → Viruses → Predicted Viral1118Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0076927_102152Ga0076927_1021521F008134MPQLGSNEKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKQYRDNWDLIFNKGGKDANKEES*
Ga0076927_107465Ga0076927_1074651F010392MKKYPHTTIAKTDAVGVMLKMLVILINKTKRETKMVEENKTESVEELKIKFEEDGKEYVVNDMPDNAKELYIRYQKEKQNRDNIILNANETVDNLNRLLTSFEVDMRNILEPVEDKPKIEVQ*
Ga0076927_108912Ga0076927_1089121F037686KENNMKNEKAKKVHKTKATLVAELEIVARVDKGFLNSLERANAETIKKLTALLS*
Ga0076927_111024Ga0076927_1110244F063076MAIRSGDTMIYINRKDDFGNLETVDQFNQGRKYAKEMLKEYRLSDPSAYYYMSQRPCKDWQLEAVQQ*
Ga0076927_111024Ga0076927_1110249F015990MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEMRNYVEKLHKEDKLVFLTTTTNA*
Ga0076927_115402Ga0076927_1154021F052658MGSVSRVFKKVTKAVTKPISKAFKGVAKGIMKVGKATLRGVAKIQNKLGPLGSIAMAIAMPYA
Ga0076927_117065Ga0076927_1170652F058520LGEVAYAKATNSFYNGSYSDDKQFYSDSDFQNNIEIRTQDKKEYNFLLIRPGEKKGKYILIIKDNDKDFNFSIMGSFLFKEDIPERLTDFGYPNRPPAYKILIKELTNMEENVRQDQF*
Ga0076927_122203Ga0076927_1222036F053219MKYAIFDIDDTLCTLKHRRDKAMESGKMNYKTLFDPKLVEYDLPEDHVVELAQTLKMFNTKIIVMTARPYYMDIATRKWLTNNHIPFDQLITKEKNKVFLKSSIWKESKLLELLQDISIEQIVLSIDDNKDNQAMFESYGIPVFDPLLQ*
Ga0076927_123383Ga0076927_1233831F056526MASIYNDIRAALENKLANTANLPSGIAYENVSFSPTTGTSYLQTNFLP
Ga0076927_123671Ga0076927_1236712F011539MKKMPKQKKTNTREEKEIIQDYFMDCRFRFQDQYKEKVKLIEKNFPLYAVDKTQVPCLLTMDLITYSQGTMTKEEFESYKLYVQDVLNGYRPPIKFEVIEGGKK*
Ga0076927_123851Ga0076927_1238514F004688MIKEYTMPCIHMNGSGETSLRKQYYKLFEAVSEVQIKLLFDTDFHQRDYYPLGDEAWDKAYQEREEVEKAMDTVYQYAKQHMLFLEYGKEPLR*
Ga0076927_126654Ga0076927_1266542F011888MTEEPAARTRARLEKTKGRHRAKIEILNEILNWIELGKSFEDIQQHCSLSIEYHDMQVEVIKEQIRGLFIPGRNENEEGN*
Ga0076927_126910Ga0076927_1269102F047366MTYSGIFDEVDLKEVKKLKREIEKLKKIIDDLETHMNLKDFEIQSLKERLKNEKLI*
Ga0076927_127755Ga0076927_1277551F083372MIMQQYKISYPRAEFAYARHIRDNLKHEGEIIYPHQPSCRLLEDGTWLLITITGERLGTVSPSGTVRLT*
Ga0076927_130208Ga0076927_1302083F073436MLQPYGMFLSDMKKQVSTKRLLDTLLRSYMDTNDLKNIYNGDGSELITVDEAVKFVDGLKEEASPEQVAFESQLDTMMEEFRNVFPPSMGEAERGGTWFDLMHSVWNKHVQVELMKRYSNLYLGGGYIRGRGKGCKHNTNELKN*
Ga0076927_133029Ga0076927_1330293F029711MGLEAKGTFPFQMYQIPEFTATTVATQPTPPAKVSADKPKVVEPATRSEVTIRLDKYWQEKAEELLNRQRSMAELAYSPNGRIVAPIDVGKILDVEV*
Ga0076927_133866Ga0076927_1338668F002495MSTDNNGSAKQKDWVLFPFDASNERAIKLDFSGNVTLDNGNKGTILGVKGQSKDGNTRFVKVFAQVGVIFKGDSKFTGEMNYPEAGGQKGLIGWLNDAGTILSGYKNEYKPKQPKAESKEIPF*
Ga0076927_135960Ga0076927_1359602F070007MMNNLPVEAQRELRMLGIMIPTEDEVEVEEDLRALYLSKDWYNDPRDGNGEVTF*
Ga0076927_140289Ga0076927_1402892F015990MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEINNHVQELLTNNKLQSKTTTRNV*
Ga0076927_142121Ga0076927_1421211F033221VEGDTEKHSNYELIQYELPFPENSILIERDKEAKRVQQLFVTSIKQSLINNNNN*
Ga0076927_142121Ga0076927_1421212F058106MTVLEQQSFIPYTESKSPEERRQYIEEQIALGNPKYKDRNTWLKENADKIRISKLEAQVNEILAKLPK*
Ga0076927_142121Ga0076927_1421214F042572MMLINLVYQEIDRKTMSRNLIVYKVEYRNQSDPWCGRKFIKTKRIVMTPDEVNQTDGYWRNHRNVRNKFYKQMGDNYSVWSVKKA*
Ga0076927_142198Ga0076927_1421981F052541MVKLILSNEKMITLTRGNKTIKRTEIDYKTNKAMYDFRGFKP
Ga0076927_143239Ga0076927_1432391F061778MNKYGIAVHYEEGFTVEVTATNVDEARKVAEDYVNEYCGVRESFNDTQDTGNTYLKTYHRDCWIVGEN*
Ga0076927_145479Ga0076927_1454792F038682MPAGKDKLPYSNIIAKKVREGIRSGVSVKDILSSIQKYQNAPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALDGDFKSQELFLRSK
Ga0076927_145973Ga0076927_1459731F074032LTDLNESVLKSSDRLGMKILDASSFDKYLYGAGERGYRVALKEIFGDNFVGNLDNLNKALQISARRQPPKSMGVFGSAFSDIIRARLGQFTLSGRLFTASRRIYAKAAERVMANALLNPTSLKELISLRNFKPNTKEAIAILSKLDGSIFIKDNFEESKPFTAIANTLFGDARNN*
Ga0076927_146899Ga0076927_1468991F012719MDKYLKWIATGFLMIGVGANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITI
Ga0076927_147169Ga0076927_1471691F006866MEEQGKSATVLINRNNLNNLFELLVQVHLRGQLSRDEQAFLKNFIELPDAPPRENRQARRANTQAIKKLFREE
Ga0076927_150038Ga0076927_1500381F098208MSNTYTIKDVLRVGNLLDDGTNFKCNKCNKSGEMTYQALPGKDFKNGFDYSCGHC
Ga0076927_150697Ga0076927_1506972F095310NNMKMFLIKLLTTLAVFLTMYISIVIVNDDTVENTDEIITLNRKVQSLEETLQAVKQQQEYLQIMHKGLRDALNNRTVEVDRLVEQAVDDKFNEQSATGGLGVLTGEQVIEEVVE*
Ga0076927_151582Ga0076927_1515824F093722IDDYWYSGETFEMMSDDEFQIEQILMEAGAYGLRSEVDHYAKRLLEKNPLSSRVDAYVKAYHELIKD*
Ga0076927_152427Ga0076927_1524271F031527ETMKKQKNKMKTVYEYMTVFFAILGTLAMVSAVGAIETDQWLLGGAAVSTGIASYIMSLFSQQLYSEAK*
Ga0076927_153049Ga0076927_1530491F037490SPDRLDACVWAITDLSLNGYAKPKLTLAYSSAKGLSQK*
Ga0076927_169571Ga0076927_1695712F061808MNKFRVFVKDKFDVVFDTIEKARECRKALRQLKYKGIEIIVTQEDIDPR*FANPHNDES
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