NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006154

3300006154: Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_693M_control - microbial_metagenome



Overview

Basic Information
IMG/M Taxon OID3300006154 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114764 | Gp0121222 | Ga0081175
Sample NameIntestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_693M_control - microbial_metagenome
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Texas Southwestern Medical Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size177796478
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIntestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUTSWMC, Dallas, Texas, USA
CoordinatesLat. (o)32.73Long. (o)-96.97Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082888Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0081175_1050076All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0081175_1050076Ga0081175_10500761F082888MSQIIEVIVENKNYQIEWALSEYFGELKGKKFMLNKMAAEQIEMINNLSNTAKILLSAVAGAVIQHLIDNNCQMDNIFENGYFIVKN*

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