NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006187

3300006187: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan - 1398105537976 (version 2)



Overview

Basic Information
IMG/M Taxon OID3300006187 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118793 | Gp0095082 | Ga0097678
Sample NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan - 1398105537976 (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size477868214
Sequencing Scaffolds10
Novel Protein Genes16
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta1
Not Available7

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Cape Town, South Africa
TypeEngineered
TaxonomyEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y
F017165Metagenome242Y
F087441Metagenome110N
F092364Metagenome107Y
F094111Metagenome106Y
F095751Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0097678_1047106All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae1603Open in IMG/M
Ga0097678_1056094All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta1391Open in IMG/M
Ga0097678_1057394All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae1365Open in IMG/M
Ga0097678_1086240Not Available960Open in IMG/M
Ga0097678_1095803Not Available874Open in IMG/M
Ga0097678_1108286Not Available783Open in IMG/M
Ga0097678_1111496Not Available763Open in IMG/M
Ga0097678_1118305Not Available723Open in IMG/M
Ga0097678_1138876Not Available625Open in IMG/M
Ga0097678_1145794Not Available598Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0097678_1009603Ga0097678_10096035F092364LYTKGIGLTINDILRNQIQPNTSFGNQSALVQSAAGITMIMFIIGFINGIFSLITFRNKELRKVGCVLYLLASSITSLLTITMLTIKFWFVVLIQLYSTVNTSILRTDCVFLGPVLKLCLYLDGWLNACVAIERAVNVSKGVNFNQNLSKRVARWIILILLILIMGSIVHEPIHHDLFEYTIQKHKPMNNYLTVNMSMANDTNAEYENEYHVLCVIRYSRSVQIYNTITLFIHLLVPFLANLCSALFIIFGTARRRSAAQKNETFKEIVRKQMSEHKQLLISPFILLILAMPRLIVSLASGCVDPSQNHWLYLCAYFVSFTPPMLIFTVFVLPSELYSKTFKESMTQCRICK*
Ga0097678_1012978Ga0097678_10129782F092364LYTKSIGLTINDILRHQIQSNESFNNQSILVQAAAGITMIMFLIGFISGILSLITFKNTELRKVGCVLYLLASSITSLLTITIFTIKFWLVVLIQLYSIVNTSILQIDCVFIGPILKLCLYLDGWLNACVAIERTVNVSKGIKFNKTKSKRLARWTILILFILIMGSIVHEPIHHELFEYTNPKSKSLSNNSPVNISMKNYTNSEYEIEYNILCVIRYSRSVEIYNTITLFIHLLVPFTVNLFSALFIIFGSARQRTTVKKNQTFKEHVFTQMSEHKQLLISPFILLILAMPRLIISLISGCVDPSQNPWLYLCAYFISFTPPMLIFVVFVLPSELYRKNFKDSIAQCRRQNPQ*
Ga0097678_1019331Ga0097678_10193312F095751MRFKPNILTEIQKIVAQNFQPPSVDDHHPYVAVYVRRSDKVQSKEMSQAYTLKQYFDLFDSDARRANISTVYLNSEDARVSNEFIEINKEKQGYYKLLTIKTTKDMVYGKLTQMSREQREKITIEFLTDLYIEANADLHSGTLTSNWCRLVDEIRLVLGKMLPFYTPENKYWMDY*
Ga0097678_1041466Ga0097678_10414661F092364VNLFIITIKTNLFLDKKHSNCIIGDQCNLYAKGIGLTINDILRNQIQPNTSFGNQSTLIQSAVGITMIMFLIGFINGIFSFITFRNKELRRVGCVLYLLASSVTSLLTITMFTIKFWFVILIQLYSTVNTSILRTDCVFIGPILKVCLHLDGWLNACVAIERAVNVAKGVKFNKTKSKYVAKWIIFIIPILIIITIIHEPAHHELFEHTTQKYKFANNNLTVNMSIETEHNLLCVIRYSRSVQTYNTFTLFFHLLLPFVANLCSALFIIFGTARLRSGAKKNQTFKAHIIKQMKEHKQLLISPVILLILTMPRLILSLVSGCVDPSSNPWLYLCGYFISY
Ga0097678_1047106Ga0097678_10471062F094111LTLSYNQSRFRPNATWNLNATSFSNRSFFGTQPYSIFVNSNNSIYIPNRQTSEIHIWTNENDVNPTKTISGNLSDPLSLFVTTNGDIYVDNGTNGRVDKWIVENETWISVMNVTSQCYGLFIDIYQSLYCSMYLNHRVDKKWSNGTTAI
Ga0097678_1056094Ga0097678_10560942F087441MEPLAIYGRSLIETNTNLSRSLSISILDEKGNEISFETNSDSIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIFTNSIEVNQSYFTFMIDNQQTVGHRTLIFGLEGENQEYEYRVYSSGCYYLNKENEWKGDGLRVGPKTNLSQTHCFSTHF*
Ga0097678_1057394Ga0097678_10573941F094111MIFNDVTSSFSFKMFLRIWIGLFIYEQQYFTLATFSFNQPRFRPNATWNSNATTFADQSFLGAQPVTIFVNSNNSIYLSNRLTGQIHIWQNGNDLYPTKTIKGNLSSPASLFVTTNGDIYVDNGKTNGSVDKWIRENETWISVMNVTSACYALFIDIYDNLYCSVFENHQVDKTWSNGTT
Ga0097678_1086240Ga0097678_10862402F001866MIEVVSDDDSALIGDAHSMRIAELAWLIAFGAELEQERAIDRRQYLHSLIPSIRDDDSMSIIIDRNACWTIELAWLRSSLADGEQEREIDQRQEHQSMVVRIDDDDATMMLVDRNASRILELEIS*
Ga0097678_1095803Ga0097678_10958032F001866MAFGRECLQSKVVVLGDDDSALVGDANSFSIAKLAWLEALRAELEQERAIDRRQYLHSIVVSIADDDSMSIIIDRNACRKYELARLVAARADREQEREIDRRQEHQSVVVGIEDDDAAMMLVDRNASRKGKLEI*
Ga0097678_1108286Ga0097678_11082861F017165HRGLIAFSAGNRVHVIGANQWLADTFTWRPDRHRYAPSWIKQAVLTMTMIRSVIDECSAMSMIPNELLFEIFSFL*
Ga0097678_1111496Ga0097678_11114961F007322MVVAISDEDAIMIVIDRKAIRTQELAWLVAFLAELGHERAIITREYLHSMIEAIDNEQETLTMVERQAHRVIEQAIGIAMLLGTDRELDSSITIKSIVSHLFLFSLSLKTTKR*
Ga0097678_1118305Ga0097678_11183051F007322MIVIDRSARWLIELTWLAAFLAELGHERAIIAREYLHSMIVAIGDEQETSMMVERQAHRAVEQAISIAFSLGADRELDSSIIIKSIVSHLSSNLSLSLTTTKRCSKLQPAQTNEMKI*
Ga0097678_1138876Ga0097678_11388762F017165VAFDEHRGLIAFSAGHRVHVIGANQWLADTFTWRPDLHRYAPSWMKQAILTMTMIRSVVDECSAMSMIPNELLFEIFSFL*
Ga0097678_1145794Ga0097678_11457942F001866MAFVSERLKLMVVGVGDDDSTLIGDAYSSRILELAWLIAFGAEHEQERAIDRRQYLHSIVASIRDDDSMSIIIDRNACWGVELTRLTSLLAANVEQEREIDRRQEHQSIVAGIG
Ga0097678_1151454Ga0097678_11514541F095751NWYRTQLIFYLMRYKPSVLAHVRNVVAQNFNPPSVEQHRPYIAVYVRRSDKVQFKEMSQAYTLKQYFDLFDNDVQRVNISTVYLNSEDERVFNEFNEINKEKNGYYKLITIKTTKNVVYRKMTGMPRAQRGKIVLEFLTDLYIEAHADLHAGTLTSNWCRLVDEFRLVLGKKIPYYTPEKRFIMDG*
Ga0097678_1170151Ga0097678_11701511F007322MIASISDEDAIMIVIDRNGSRILELAWLAAFLAEVGHERGAIIITREYLHSMSIGDEQEISMMVERQASRIVQLAIGITFLLGADRELDSSITIKSIVSHLF
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