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Sample 3300006213
3300006213: Combined Assembly of all intestinal microbial_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA
Overview
| Basic Information |
| IMG/M Taxon OID | 3300006213 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0114764 | Gp0115735 | Ga0081460 |
| Sample Name | Combined Assembly of all intestinal microbial_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Texas Southwestern Medical Center |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 1020957121 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. 26_22 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information |
| Location | UT Southwestern Medical Center, Dallas, Texas, USA |
| Coordinates | Lat. (o) | 32.815891 | Long. (o) | -96.846336 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F013656 | Metagenome | 269 | Y |
| F047755 | Metagenome | 149 | Y |
| F082888 | Metagenome | 113 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0081460_1001077 | Ga0081460_100107770 | F047755 | MIPDFKRKEIFNMENEKVKYLIDMINDMDIKDKLRLAICMSQSEWSGLIYNTKENFEKFDSMLKDIDEEYKTTLINFGKYKLVMFIMAKLMEMETTEQNEVALYLFNNIKAI* |
| Ga0081460_1010780 | Ga0081460_10107809 | F013656 | LEKRYKEPNRIEMETTINVLYEENVISIYTNKPDLQKQLCKSIGEPEKEFKKGKSILASRWKIPLNEKSKISKMMLKANIFQL* |
| Ga0081460_1038625 | Ga0081460_10386257 | F013656 | VKKIYKTPNKSETETTINVLYGEERLTIYTNKVDLQKQLNKLLGEPTKELKIKRSIAGSIWEISFKEKSKISKVLLKANIYEL* |
| Ga0081460_1114383 | Ga0081460_11143833 | F047755 | MGENKVENVINIIKDMNIKDKLRLAICMNDSQWLTLNYDRKEMYNKFDIHLRKLDEEYRTTLINFGQSKYFIINFTMAKLMEMEQTDRNKIALYLFNSIEE* |
| Ga0081460_1147099 | Ga0081460_11470993 | F082888 | MAQIIEIIVENKNYQIEWALSEYFGELKGKKFMLNKMAAEQIKVINNLSDTAKILLSAVAGAVIQHLIDNNCPIDNIFENGYFIVKS*IMNKL* |
