Sample 3300006254

3300006254: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339

Overview

Basic Information
IMG/M Taxon OID	3300006254 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052794 \| Ga0099365
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	114469468
Sequencing Scaffolds	24
Novel Protein Genes	25
Associated Families	23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F051988	Metagenome / Metatranscriptome	143	Y
F054110	Metagenome	140	N
F057446	Metagenome	136	N
F067846	Metagenome	125	Y
F072445	Metagenome / Metatranscriptome	121	Y
F073671	Metagenome	120	N
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F081510	Metagenome	114	N
F089055	Metagenome	109	Y
F090517	Metagenome	108	N
F094007	Metagenome	106	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F097525	Metagenome	104	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0099365_1000036	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44208	Open in IMG/M
Ga0099365_1000039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	43402	Open in IMG/M
Ga0099365_1000046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	41049	Open in IMG/M
Ga0099365_1000081	Not Available	34851	Open in IMG/M
Ga0099365_1000303	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	20908	Open in IMG/M
Ga0099365_1000329	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	20222	Open in IMG/M
Ga0099365_1000481	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	16815	Open in IMG/M
Ga0099365_1001106	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	10877	Open in IMG/M
Ga0099365_1001363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	9631	Open in IMG/M
Ga0099365_1003526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5165	Open in IMG/M
Ga0099365_1003905	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	4777	Open in IMG/M
Ga0099365_1004754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4111	Open in IMG/M
Ga0099365_1005573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	3638	Open in IMG/M
Ga0099365_1006904	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	3073	Open in IMG/M
Ga0099365_1006989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3046	Open in IMG/M
Ga0099365_1015030	All Organisms → Viruses → Predicted Viral	1589	Open in IMG/M
Ga0099365_1017207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1402	Open in IMG/M
Ga0099365_1020436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1193	Open in IMG/M
Ga0099365_1028827	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	855	Open in IMG/M
Ga0099365_1029509	Not Available	836	Open in IMG/M
Ga0099365_1032497	Not Available	759	Open in IMG/M
Ga0099365_1032952	Not Available	749	Open in IMG/M
Ga0099365_1033540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	735	Open in IMG/M
Ga0099365_1041227	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	593	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099365_1000036	Ga0099365_100003650	F081510	MKFNVNAIKSTAKTTWVTTKILGKKYAPYILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMDAQGDPYSRMEVVTDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFIPKKTRKELN*
Ga0099365_1000039	Ga0099365_100003954	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIENIEWDISHGDSEELCKFYEKISEDDEFLKAIALGNDFEEMRIKILTAMAEDRLEQLEEDYRKGFILND*
Ga0099365_1000039	Ga0099365_100003960	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELINYTDKNKVQK*
Ga0099365_1000046	Ga0099365_100004636	F054110	MCNTNLNRYCVVLCVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0099365_1000081	Ga0099365_10000815	F105376	MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK*
Ga0099365_1000303	Ga0099365_100030315	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKSLQDNGFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDKALREFDKLVISEDDILRAASECGIEMNRDIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCVIGGKGWLEMADSTRIGQMINSIELDIYEVNS*
Ga0099365_1000329	Ga0099365_10003292	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0099365_1000481	Ga0099365_100048122	F094007	MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAINACESCPLKLDCELYGKLGEAVLNDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNDA*
Ga0099365_1001106	Ga0099365_10011061	F046433	MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLEVDNKPVYVDVGNSLSQCRVKKEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSNYIDNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKEERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLDKG*
Ga0099365_1001363	Ga0099365_10013637	F089055	MNSTPECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYGKSLDYINNSPLETVQAIGKSLQLFREDKTKESCR*
Ga0099365_1003526	Ga0099365_10035267	F046432	MWEMTESKLSNIISKYQLPMDDYLVEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVEAEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEMKP*
Ga0099365_1003905	Ga0099365_10039052	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0099365_1004754	Ga0099365_10047542	F046432	MWEMTENELNEIISKYQMPEGRYSVEEEGSFGESEFFWVIQNQLTNQKYLLMNTYSHHGVEAELECYREGGFDNLEAIPRRIETLELASDAEDEVSKYLFGMYSIFEMKSI*
Ga0099365_1005573	Ga0099365_10055732	F077404	MTCSRSRNPPNTDGSADHYAPQAGPALSRKKPTQIGNTKNPFAMNTLKTIFTFFFTLCFMMVANGYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYTFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFW*
Ga0099365_1006904	Ga0099365_10069042	F033081	MYTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRWKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPAGWATVTAWAVGVAGFFLMGDLTNYTPSQKFLHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0099365_1006989	Ga0099365_10069892	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVLLDRGALNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI*
Ga0099365_1015030	Ga0099365_10150302	F072445	MATVTDLVRGSQLRAKFIDYTSTYRDNNKEFLRGDMWEFKVLSAPKIVYYPGDDIINARLNSVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDREDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRSDVTLSAKFEHYSLEFKNL*
Ga0099365_1017207	Ga0099365_10172071	F095633	MKNYENSTEVGRREGLTEGELRTMGMLAMEATEELKKTTIRKEAVLLGSVPFDYWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDEDRSHKSYEFTCPVLKKYPDGELYPIREAYVISAIDVNGSQEVDFKII*
Ga0099365_1020436	Ga0099365_10204362	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIEMIKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRYHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFSGDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERISGFEVDNDPESHEASVLVMVASGDYLDNGISAYSQYGGTIYPVEAYYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIGELSLPALANIVRPYRNGEDFDGLSRFRQLLEKE*
Ga0099365_1028827	Ga0099365_10288271	F097525	MQQKKIMFKIQNTYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISADKEKSTEIDFIESELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKV*
Ga0099365_1029509	Ga0099365_10295091	F077405	PRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0099365_1032497	Ga0099365_10324971	F051988	YNIEALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF*
Ga0099365_1032952	Ga0099365_10329521	F032313	PPPRDAGVEKGKELLAKKKIRLMYRLLFLLFAITLMACDNNTPQEKPHEREKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGTGLTSVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKVPRFVGGSITKEFTCRNGVILRHWQGVNVNLVDTVNYVYNEDSNEIVLEGTGTRWYVLRLNKNAVEFLQRGHTLWGYFDWYYGRNSGRSEVTLDEK*
Ga0099365_1033540	Ga0099365_10335402	F046431	KMFITIILMLSIIITYGSEIIVRAAESDLVITPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFNNVDEEVKVLNIYPTIEGLPMVNVTYLDGQTETIPKSGLLKVWMEGRNSK*
Ga0099365_1041227	Ga0099365_10412271	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNRKTSST

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006254: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences