Basic Information | |
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IMG/M Taxon OID | 3300006290 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052833 | Ga0099549 |
Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 550534656 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 40759806 |
Sequencing Scaffolds | 4 |
Novel Protein Genes | 10 |
Associated Families | 10 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 3 |
All Organisms → cellular organisms → Bacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018385 | Metagenome | 235 | Y |
F027205 | Metagenome | 195 | N |
F036281 | Metagenome | 170 | N |
F043991 | Metagenome | 155 | N |
F049707 | Metagenome | 146 | N |
F051214 | Metagenome | 144 | N |
F067847 | Metagenome | 125 | N |
F074985 | Metagenome | 119 | N |
F081456 | Metagenome | 114 | N |
F095632 | Metagenome | 105 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0099549_100047 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 31868 | Open in IMG/M |
Ga0099549_100103 | All Organisms → cellular organisms → Bacteria | 22807 | Open in IMG/M |
Ga0099549_100254 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 12776 | Open in IMG/M |
Ga0099549_104318 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1649 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0099549_100047 | Ga0099549_10004716 | F095632 | MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN* |
Ga0099549_100047 | Ga0099549_10004738 | F049707 | VSEYKSPHNDGHDPYILIWEYGTEVQQTEFIERWAEYEPDTGWTVWYFRLDDGRIMKFRALEWEQKDDVNHLTTIYFTPKQEENS* |
Ga0099549_100103 | Ga0099549_10010312 | F027205 | VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDIKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYILDEYDIPRRIKRRTK* |
Ga0099549_100103 | Ga0099549_10010313 | F036281 | MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKELFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWRAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF* |
Ga0099549_100103 | Ga0099549_10010314 | F074985 | MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQTAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID* |
Ga0099549_100103 | Ga0099549_1001035 | F018385 | MAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK* |
Ga0099549_100103 | Ga0099549_1001038 | F051214 | MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYRDKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIV* |
Ga0099549_100103 | Ga0099549_1001039 | F043991 | MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDFPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA* |
Ga0099549_100254 | Ga0099549_1002542 | F067847 | MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQRDPKYKELDDKLKETELKNL* |
Ga0099549_104318 | Ga0099549_1043182 | F081456 | MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAMTVILYTISAD* |
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