NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006349

3300006349: Human stool microbial communities from NIH, USA - visit 1, subject 159146620



Overview

Basic Information
IMG/M Taxon OID3300006349 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052486 | Ga0099714
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159146620
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72084246
Sequencing Scaffolds4
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055775Metagenome138N
F074964Metagenome119N
F089005Metagenome109N
F090484Metagenome108N
F092228Metagenome107N
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0099714_100023Not Available148588Open in IMG/M
Ga0099714_100200All Organisms → cellular organisms → Bacteria41917Open in IMG/M
Ga0099714_102018All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii4656Open in IMG/M
Ga0099714_104546Not Available2096Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0099714_100023Ga0099714_100023147F099406MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGDGKVLESLGMVSTGVDSTYLDLSMFSGNSGTLDEASFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPRVVTTLANLPKYAHNIIANVASATSLSMTVSSEYAGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0099714_100023Ga0099714_100023167F090484MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWDLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLSAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPISQYSSL*
Ga0099714_100023Ga0099714_100023190F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKTLEIPAEYTVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGSEYKPFGFATSETLETKSSAKWIIKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0099714_100200Ga0099714_10020022F055775MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVGKKISHARVVSWSVDTTGDSPKYTIHIINADSGVVAAIALN*
Ga0099714_102018Ga0099714_1020182F092228MKKKCTLVLISVLTVACIVSAYLLFFYNSSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATRNFLYCYTINYILPRGVANSWVKSYLIDQLVIS*
Ga0099714_104546Ga0099714_1045462F089005LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI*
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