Basic Information | |
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IMG/M Taxon OID | 3300006364 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114433 | Gp0116177 | Ga0075482 |
Sample Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_RNA1 (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 49645227 |
Sequencing Scaffolds | 17 |
Novel Protein Genes | 23 |
Associated Families | 20 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 12 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 1 |
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C | 1 |
All Organisms → Viruses → environmental samples → uncultured virus | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → river → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | USA: Delaware | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000048 | Metagenome / Metatranscriptome | 3365 | Y |
F000073 | Metagenome / Metatranscriptome | 2639 | Y |
F000080 | Metagenome / Metatranscriptome | 2485 | Y |
F001346 | Metagenome / Metatranscriptome | 718 | Y |
F001679 | Metagenome / Metatranscriptome | 653 | Y |
F001758 | Metagenome / Metatranscriptome | 640 | Y |
F006508 | Metagenome / Metatranscriptome | 371 | Y |
F007695 | Metagenome / Metatranscriptome | 346 | Y |
F008512 | Metagenome / Metatranscriptome | 332 | Y |
F017318 | Metagenome / Metatranscriptome | 241 | Y |
F020094 | Metagenome / Metatranscriptome | 226 | Y |
F024800 | Metagenome / Metatranscriptome | 204 | Y |
F025295 | Metagenome / Metatranscriptome | 202 | Y |
F026580 | Metagenome / Metatranscriptome | 197 | Y |
F037756 | Metagenome / Metatranscriptome | 167 | Y |
F042356 | Metagenome / Metatranscriptome | 158 | Y |
F044534 | Metagenome / Metatranscriptome | 154 | Y |
F067804 | Metagenome / Metatranscriptome | 125 | N |
F078768 | Metagenome / Metatranscriptome | 116 | Y |
F099393 | Metagenome / Metatranscriptome | 103 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0075482_1000233 | Not Available | 686 | Open in IMG/M |
Ga0075482_1000747 | Not Available | 760 | Open in IMG/M |
Ga0075482_1008230 | Not Available | 755 | Open in IMG/M |
Ga0075482_1022101 | Not Available | 657 | Open in IMG/M |
Ga0075482_1032660 | All Organisms → cellular organisms → Bacteria | 908 | Open in IMG/M |
Ga0075482_1132496 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales | 526 | Open in IMG/M |
Ga0075482_1140322 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C | 617 | Open in IMG/M |
Ga0075482_1145659 | All Organisms → Viruses → environmental samples → uncultured virus | 1136 | Open in IMG/M |
Ga0075482_1149296 | Not Available | 742 | Open in IMG/M |
Ga0075482_1149519 | Not Available | 719 | Open in IMG/M |
Ga0075482_1153972 | Not Available | 602 | Open in IMG/M |
Ga0075482_1156266 | Not Available | 618 | Open in IMG/M |
Ga0075482_1159771 | Not Available | 632 | Open in IMG/M |
Ga0075482_1162315 | Not Available | 594 | Open in IMG/M |
Ga0075482_1165547 | Not Available | 628 | Open in IMG/M |
Ga0075482_1165909 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii | 512 | Open in IMG/M |
Ga0075482_1167564 | Not Available | 766 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0075482_1000233 | Ga0075482_10002332 | F001758 | RLGQAGWLSPSQAGSKGAGAEAGFTSSSGGVRALSVHAKKGLNG* |
Ga0075482_1000747 | Ga0075482_10007471 | F007695 | VKRRDPWFEANALPKAVAVLGLSGQDAEISHRSVLIWFAGRWRNHQSKRAEKPHSKSSGGNALDGPATRPETPLAVENSVGKLAAPEAPNA |
Ga0075482_1004385 | Ga0075482_10043851 | F000080 | MTFWQENYPFIKDVYIMRQTKMIEWMENVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERGEVKKWLKQILEILMAERGKEERTEQINKLDGLIKKHEELIPTVLKTQVKVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCIENVEELIERQEKSLSQLETKRAIVRELISKGKQLLENPDKPKFLDGHVQRIEEGWDETKDKAQARLQLLQNTKAAWEGYAEGLEQIAVEFEKAEEEMKKVKKRFNLQAAFEDLERRQTIFNICKSTIENMFGSIQHNYDVMTMTLPEDKKDFVKKEVKAVQEKLEVVGRFEEKVKKIEDFCASLNDFDKTIRVIDGWMKDADSQLNTIKNKSDQMTPEDRVSYTMELQEDVAAKVQMIKKAIATESELLPQGDKVPQDAQDYKDELKRIEDFVTDLHKRVMKECDNFSEDVKYW |
Ga0075482_1008230 | Ga0075482_10082302 | F078768 | LRWLAVINRLSLVVSRIIPGDWGKVESGWLAWPL* |
Ga0075482_1022101 | Ga0075482_10221011 | F044534 | HQFLWPESCPVSSHTNQELCGKARLETASSRVRPTGSFDPCADAVTPEGFGCYCADQNAVTVPGGPTPPEGLARRTREARNGAATAGRERIWQSS* |
Ga0075482_1032660 | Ga0075482_10326602 | F001679 | MSWHQKAKKGVEVCEKPGVVDKRTLIPGFPNQRALNS* |
Ga0075482_1125984 | Ga0075482_11259841 | F000048 | KELQDRYEKVKAVSDEWVKKVDTLVKEWKLLDSTVSELNSWVAQDRGAEGEAMFSLEKMESTLGELKNIFKEKEKLVENL* |
Ga0075482_1132496 | Ga0075482_11324961 | F020094 | VLLFVCINLHNVKVKINYFISYLYFSFFNRQKLISHVIHINLSLTNTLINVNTIKGNPRLFYSAGMCNLQKSQKTRQPKAILTILRILLTKTKFFKSKPVAIHFNNLFFNQQSYILKKLKKKVFTKLIASYRCYSHNG |
Ga0075482_1140322 | Ga0075482_11403221 | F017318 | MKFQRTVQAAYDITTNGIAANVGLINFSLSDLPSSSDFTNLFDLYKIERLDIAWTPEYTELTDASALSNAVNVYFHTAIDPAGIVPAAVDDILQYRTLHSTPITKMHKRDFVPAILLDGIIPASCYISTGSPNSNLFGIVYGIPATGVAMTFRSVA |
Ga0075482_1145659 | Ga0075482_11456591 | F017318 | VEDAYNIICDGINPSVGSFNFSLNDLPSYTEFTGLFDLYRIDEIEIEWYPEYTVLSDGGVTSPAVNVQLNTAIDPAGNTPILVTDVLQYRSLHATGISKPHKRRFVPSYLLDGISPAKCYISCASPSSNLWGIVYGVPPTGTAMTIRSRARFFLSLAQSR* |
Ga0075482_1149296 | Ga0075482_11492961 | F099393 | QRERETLMLVERGMPMRQIFPHGESQAPDSACGQVTGSGPMVGRVKKVVLFSVCLPALLIALGAGESLNLAYGQSESNAAASSAVRATASGVSDQTFSTRERSEPTVTGAAMHVALFVPRH* |
Ga0075482_1149519 | Ga0075482_11495191 | F024800 | VARGQRIARSDGRPRANGGDAETKSRACLHQVRRPVAQPPVQAGLEASLEFQRARAAGRPCYEAERTPLAVENSVGKPAA |
Ga0075482_1149519 | Ga0075482_11495192 | F001758 | GLEDSQATGERLGQAGWLNPSEAVSQGAGEEAGFTGSSGGVRALPATRKTEPRGEER* |
Ga0075482_1151041 | Ga0075482_11510412 | F000073 | MEEHNNLRTICDDGKGKLQWEREIPHDALDNLQNLANSDFHKNLGTIIHDIYLTAHKMFSDMPQGDHKKRAKYRFASKTLMRILPDNLKNEVEGLIAKNTMTLDLYEILGQCTWGQRSL* |
Ga0075482_1153972 | Ga0075482_11539721 | F026580 | VRGDEKPLRVESNVSQAGFEPGRIAVTQRVFGCYCASARTDNSGGLREGVSQRKDAERRDKVSVRSGKDTWSRQDP* |
Ga0075482_1153972 | Ga0075482_11539722 | F001346 | VKTFREAGDSKNAVAGLWMKGNLRDKRRDPWHRANAPPKAVADPALSGGDVKMQSQTCLRLVREPVAQPPVQAS* |
Ga0075482_1156266 | Ga0075482_11562661 | F008512 | VRTALAGAIKIETAQRKTPKGGQKERTHREEHGNSAGSVKNFQAPAMLKTTPLDCEIKSSLREKRRDPWFGANASSKAMADPEPVVKTRK* |
Ga0075482_1159771 | Ga0075482_11597712 | F006508 | VALANASSKAVADQCQVVKTRSRNRRRVLTWFASRWRNHQPKRAEKPHSK |
Ga0075482_1162315 | Ga0075482_11623151 | F025295 | MVTGPGEAAELLRRREALIPEKLKFITRKSNLQKPI* |
Ga0075482_1165547 | Ga0075482_11655472 | F042356 | LSETQLPRGYLVATVHQHGASDSGGFDQPFETAQRKPLKDGQKERMTRESHDGSAGRVKNFRAPAMLKTAPLACEQKAT* |
Ga0075482_1165547 | Ga0075482_11655473 | F006508 | VAVVNAPLKAVADQSQVVKTRRPNRRRVLTWFASRWRNHQPKRAEKPHSKFN |
Ga0075482_1165909 | Ga0075482_11659091 | F067804 | ADNAHDDVKIAGLVQGFFVGAFDFHGMTDVAHCVSDANPVEQHFENAMRGFWNGSYQEVTKGVDQLGLAVSDIGDMLDHCGKIDHHDYEQIQRMAESFLHPKQVLLEAAESLIVNGVNIFEDTREGLHDYRLGKWVDAGEHFGQAAAMLLYGKTQMVDHEELFFDFDNHW |
Ga0075482_1167564 | Ga0075482_11675642 | F037756 | LFPVPTFGAHLAVAAGFPTPFPAANGVSGLVAGPSNLLRG* |
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