NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006625

3300006625: Soil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1



Overview

Basic Information
IMG/M Taxon OID3300006625 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117801 | Gp0125024 | Ga0101569
Sample NameSoil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1
Sequencing StatusPermanent Draft
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size244265593
Sequencing Scaffolds26
Novel Protein Genes28
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salipiger → Salipiger bermudensis1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium4
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)grassland biomelandfertilized soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
Locationthe Inner Mongolia Grassland Ecosystem Research Station
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000776Metagenome / Metatranscriptome895Y
F001868Metagenome / Metatranscriptome624Y
F003251Metagenome / Metatranscriptome497Y
F003258Metagenome497Y
F003671Metagenome / Metatranscriptome474Y
F005005Metagenome / Metatranscriptome415Y
F006715Metagenome366Y
F010137Metagenome / Metatranscriptome308Y
F015992Metagenome / Metatranscriptome250Y
F018074Metagenome / Metatranscriptome237Y
F019255Metagenome / Metatranscriptome231N
F022723Metagenome / Metatranscriptome213Y
F026116Metagenome199Y
F027647Metagenome / Metatranscriptome194Y
F029521Metagenome / Metatranscriptome188Y
F030274Metagenome / Metatranscriptome186Y
F047665Metagenome / Metatranscriptome149Y
F048342Metagenome148Y
F049803Metagenome / Metatranscriptome146Y
F053511Metagenome / Metatranscriptome141Y
F061196Metagenome132Y
F064003Metagenome129Y
F071204Metagenome122Y
F073919Metagenome / Metatranscriptome120N
F080337Metagenome / Metatranscriptome115Y
F088958Metagenome109Y
F090345Metagenome108Y
F099227Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101569_10007126All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
Ga0101569_10090097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium614Open in IMG/M
Ga0101569_10110114All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls856Open in IMG/M
Ga0101569_10118104All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salipiger → Salipiger bermudensis647Open in IMG/M
Ga0101569_10184593All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium732Open in IMG/M
Ga0101569_10365538All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium657Open in IMG/M
Ga0101569_10366976Not Available599Open in IMG/M
Ga0101569_10412231Not Available597Open in IMG/M
Ga0101569_10513232All Organisms → cellular organisms → Bacteria → Terrabacteria group511Open in IMG/M
Ga0101569_10589578All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium643Open in IMG/M
Ga0101569_10591680All Organisms → cellular organisms → Bacteria716Open in IMG/M
Ga0101569_10616165All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium629Open in IMG/M
Ga0101569_10693714All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium561Open in IMG/M
Ga0101569_10843214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria579Open in IMG/M
Ga0101569_10898680All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.573Open in IMG/M
Ga0101569_10934400All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia576Open in IMG/M
Ga0101569_11081585Not Available507Open in IMG/M
Ga0101569_11244527All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium521Open in IMG/M
Ga0101569_11252819All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia527Open in IMG/M
Ga0101569_11263468Not Available633Open in IMG/M
Ga0101569_11351271All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium534Open in IMG/M
Ga0101569_11417792All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia697Open in IMG/M
Ga0101569_11433855All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria596Open in IMG/M
Ga0101569_11516032All Organisms → cellular organisms → Bacteria516Open in IMG/M
Ga0101569_11634074All Organisms → cellular organisms → Bacteria521Open in IMG/M
Ga0101569_11635024All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101569_10007126Ga0101569_100071261F006715MRRLLLLALIATLASLSINAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVLDDGKPRDISYFTREGQARKPLALILILDLREDGAGRFLKRPEILKAM
Ga0101569_10007126Ga0101569_100071262F026116LNVTWMPLVQTLSATDDEQVYIFLKEAGDKFNVLVITIDQRDATVVQVTLSPKNLALLLKDPEGTGKAITQEATINDQE*
Ga0101569_10090097Ga0101569_100900972F003251MQSETYATEKEAKKAAARAYRPAILRLPNGRYACFHAGDVLPQGARAVSRWGTDRWRAY*
Ga0101569_10110114Ga0101569_101101142F010137MPRGGNKRHHFALNRILIGGLIVYVCAFAILLRNKSFDATDAVVVLIVFGIVFPLIAWIATRRAIPLSISITPSKSQLIVLFGYIIVLSVYLVGGPQWIDQHLPSSWIDSAQTRFFITLAKKLIVFVVIPLAIFRSGFGYRLRDFGIQSEGLRALRGTHLSVVVV
Ga0101569_10118104Ga0101569_101181041F027647LAVVLAALVGSAGTALAQQVIGGAIQCQTKPCVATGAHRVLFERVGDGVSDRMIAKGGHDHLHARAYTNDRDVAKGNGGHDLLRVNDGDAMDGAIGGPGYDLCVVDAAIEASDTCEAVTYR*
Ga0101569_10184593Ga0101569_101845931F049803MKISNSIRLIFWFTAIFAIGILVRAESNQKRANTLNTKSAPLRIVDQNGRPAVNGVPSPDGPIFDVTVGPDFAFHPDTVNISV
Ga0101569_10365538Ga0101569_103655382F088958ARNRRNWFISLVFCACRNSAREFQGHGCKRPTPRSNAGNFAPRLDTKLTNFGKLSSNGPRRPFGYQMKWPMPSDAKSSLWFHEVRPEIVPLHSFCQTLFPTFKASLCEIAMPVTVSGQSAISPVATIANAKPAPSNRWPSCFLDGRHLSISVRLSASTNLKLKRRGNTIL*
Ga0101569_10366976Ga0101569_103669762F090345MIYKRAGNHWKTLTRFERRETDQGEESQPLRRKTGTPRSLKDITKAKPRRRAPWK*
Ga0101569_10412231Ga0101569_104122311F099227DFVCARTADRARLMEHFDARVAGKKSKSPLPTRRFRELRILWKGSTIHLDDELWRNKKNKKSSDEIRITIKPSALIVLPPAAAIKT*
Ga0101569_10513232Ga0101569_105132321F029521MVLLRGGTRDGESTSVDVHVARLYAASEAPGMVDVYEATAELASVRGNDEKAIVYVFVDQEPVTDTTVTHLHMPASG*
Ga0101569_10589578Ga0101569_105895781F022723RPSAGSTQSVAAGADRGGENSRARKAAVSDSGYNESAPRVAETSPDANELWQKILAKVPAQKAFVRNSAAAAHVLGIEGRNFQLGFAPGDKAMMDILGTHANRRFLETLFHEITGTDWSVKLSVKEELPSKQSLASEDSRSDFKEDPLIQEAIGLFNAQIKS*
Ga0101569_10591680Ga0101569_105916802F015992MTTPTPLPASETYSTELLPRDTFRTVIAIAIVLLTIGGWIYVMMIPVDRWALSAQTRLWWIEQITGFVLALVCIAIALRKRAFLNVAFWLTIYSMIFDVVRWYFEFKEGQPTIPIALVLYALFIWRLQLARRTVAAEGQVVVV*
Ga0101569_10616165Ga0101569_106161652F000776MGDIDPLGTRKDGLDIFLDQKVEEGYTIETRTDTHAVIARRPKGLRRIMSGADPGRYVVEVDEDGVAKMRPAEPRRA*
Ga0101569_10693714Ga0101569_106937141F073919MAKKIREFMTHREPPEHIWMERDENAVIGTARMGQRMVPRIRPFDLLRSTPLSGNRARAMVFEGD
Ga0101569_10693714Ga0101569_106937142F061196RALAKGREFARRYKEPTIAMVSKYTPFPPEALSIDYDSALSSMTDEGSVADDVLKDEILTRAELIKATNIPDPGKFYDYSIIKKIYPELKKSWKPKL*
Ga0101569_10843214Ga0101569_108432142F005005SGVVSDHRAGEQVTIFYQPYPQPNLIQRTVVVTTAGGAYSFLIAPEVLTTYQAFWKGAYSAPTTVQVQPKLSIGRDVVWILHAAAGHTMAGRDVLFQRLNTATGQWVTLVKTMLNARSSARVTVRLPKGVNHLRLAMSVNEAGAGYLAGFSPILDWRER*
Ga0101569_10898680Ga0101569_108986801F064003SLSTSAEVELVVAPRSGISAVQIDLAKAHVLARDSVGREWVARMTGPTTATFEALPVGTYTLEFDLSDLTEPLVPRAPVSLLRVSGKDSKSITVTLDPRPIRMWNGSGSKAPPKTTPSAGDKGSTPPAAVPHS*
Ga0101569_10934400Ga0101569_109344001F018074GSILEDAMFELLSQPPPPEALAKMTAIEGVRIVPTALTTQQGPDRHLGPEAAGAVLILQATFVDKRGAKRFWMRGAELFQLLAVAPGFIRRFSFSDGPLGMLIAFWRTAADAHAFFSSEEHQAAMRDLYRGRWQYTHFAALWEMTTPHQRVIFCQQCDGVTPATDKVCAGCGTELFDPYAIPSHATA*
Ga0101569_11081585Ga0101569_110815852F080337MNRTRLSRPSLKITRDVDQRRDGCFTVEVWNPFVSAYQGVPSVQDGLTRVAVLADLISRMWVQRHPKRDLLVDVPDTAATVGPIWAEFRINATTYRSYDTRSDDRPTWASAT
Ga0101569_11244527Ga0101569_112445272F003671ADVNSAMPADGSDSAGYPLLLYRTAMGPDNNLAYADALLLLQRGADSNRPAADGMTFGKMLSDHRAHFQRTHRSPPAEFTALWNWAEQHGIVPWTP*
Ga0101569_11252819Ga0101569_112528191F019255MKKKKIETHKIGLVGQAPSRRGDPRKPLAGPNGQKIARLAGLNYDELIACRRRHLNTHYNGKHGKGYAFDHAKGKVKAADILLDWRVERIVL
Ga0101569_11263468Ga0101569_112634682F003258MRTLTPGQWYLRFTCEQCQQKEILFADLSRGQTKIKATYVVQCSSCSHTGSYDGDDIERYQHPSSPDT*
Ga0101569_11351271Ga0101569_113512712F053511VSAEQVALIPRCAECEAHWLPTNEEARWRAYLSGDALDEPAEVSFYCPACAERAFGGD*
Ga0101569_11417792Ga0101569_114177921F047665ENDPRNPSLDFSVLHVLSKNPQLFSDVHDNSLMLALTRALPKKFRSTNIQMLSAEEEAKIEECFRLENLWLLKTYSGTDVDRIYRTYFTPQKAEVRYSDMTDIDLTYRCLGTILELIAFSGDQVRASESEAPAPKFVGD*
Ga0101569_11433855Ga0101569_114338551F001868MSIEFNFTPELHLVDGRIIRNIEDAIAFAREQETRPGVDRRDEVLHTLERARSIEEVYAAAHLFLGWLEELEVAD*
Ga0101569_11516032Ga0101569_115160321F048342LELVDKNQLLRLSDRTKLGITTDHPSFRIGAYTLGAARDIWSTDKALLAFGSDLTFYSKPSLLVTIYGNNPISWKAYFRIRPGKMKMTMHSTH*
Ga0101569_11634074Ga0101569_116340741F030274MIVAVTLITACSKETKKARLLGEADAYFKAGNYDKAKLAYLNVV
Ga0101569_11635024Ga0101569_116350241F071204QQPVDLTFRENTPVPAAPEIDPLVEQLSELPRSELKEETLQLAAEMRSFEAGSDSAYVTTLITPRLLKNLSEEESDRELDRESTELVQRHLVTWRIYRDRFYRPARAFRDELRKRIGIKNPRREPEIPALDQAALTGAKPITEAADYLIELANRLP*

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