Basic Information | |
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IMG/M Taxon OID | 3300006625 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117801 | Gp0125024 | Ga0101569 |
Sample Name | Soil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1 |
Sequencing Status | Permanent Draft |
Sequencing Center | Chengdu Institute of Biology, Chinese Academy of Sciences |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 244265593 |
Sequencing Scaffolds | 26 |
Novel Protein Genes | 28 |
Associated Families | 28 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salipiger → Salipiger bermudensis | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 4 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp. | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | grassland biome → land → fertilized soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | the Inner Mongolia Grassland Ecosystem Research Station | |||||||
Coordinates | Lat. (o) | 43.63 | Long. (o) | 116.7 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000776 | Metagenome / Metatranscriptome | 895 | Y |
F001868 | Metagenome / Metatranscriptome | 624 | Y |
F003251 | Metagenome / Metatranscriptome | 497 | Y |
F003258 | Metagenome | 497 | Y |
F003671 | Metagenome / Metatranscriptome | 474 | Y |
F005005 | Metagenome / Metatranscriptome | 415 | Y |
F006715 | Metagenome | 366 | Y |
F010137 | Metagenome / Metatranscriptome | 308 | Y |
F015992 | Metagenome / Metatranscriptome | 250 | Y |
F018074 | Metagenome / Metatranscriptome | 237 | Y |
F019255 | Metagenome / Metatranscriptome | 231 | N |
F022723 | Metagenome / Metatranscriptome | 213 | Y |
F026116 | Metagenome | 199 | Y |
F027647 | Metagenome / Metatranscriptome | 194 | Y |
F029521 | Metagenome / Metatranscriptome | 188 | Y |
F030274 | Metagenome / Metatranscriptome | 186 | Y |
F047665 | Metagenome / Metatranscriptome | 149 | Y |
F048342 | Metagenome | 148 | Y |
F049803 | Metagenome / Metatranscriptome | 146 | Y |
F053511 | Metagenome / Metatranscriptome | 141 | Y |
F061196 | Metagenome | 132 | Y |
F064003 | Metagenome | 129 | Y |
F071204 | Metagenome | 122 | Y |
F073919 | Metagenome / Metatranscriptome | 120 | N |
F080337 | Metagenome / Metatranscriptome | 115 | Y |
F088958 | Metagenome | 109 | Y |
F090345 | Metagenome | 108 | Y |
F099227 | Metagenome / Metatranscriptome | 103 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0101569_10007126 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 565 | Open in IMG/M |
Ga0101569_10090097 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 614 | Open in IMG/M |
Ga0101569_10110114 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls | 856 | Open in IMG/M |
Ga0101569_10118104 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Salipiger → Salipiger bermudensis | 647 | Open in IMG/M |
Ga0101569_10184593 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 732 | Open in IMG/M |
Ga0101569_10365538 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 657 | Open in IMG/M |
Ga0101569_10366976 | Not Available | 599 | Open in IMG/M |
Ga0101569_10412231 | Not Available | 597 | Open in IMG/M |
Ga0101569_10513232 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 511 | Open in IMG/M |
Ga0101569_10589578 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 643 | Open in IMG/M |
Ga0101569_10591680 | All Organisms → cellular organisms → Bacteria | 716 | Open in IMG/M |
Ga0101569_10616165 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 629 | Open in IMG/M |
Ga0101569_10693714 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 561 | Open in IMG/M |
Ga0101569_10843214 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 579 | Open in IMG/M |
Ga0101569_10898680 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp. | 573 | Open in IMG/M |
Ga0101569_10934400 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 576 | Open in IMG/M |
Ga0101569_11081585 | Not Available | 507 | Open in IMG/M |
Ga0101569_11244527 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 521 | Open in IMG/M |
Ga0101569_11252819 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 527 | Open in IMG/M |
Ga0101569_11263468 | Not Available | 633 | Open in IMG/M |
Ga0101569_11351271 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 534 | Open in IMG/M |
Ga0101569_11417792 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 697 | Open in IMG/M |
Ga0101569_11433855 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 596 | Open in IMG/M |
Ga0101569_11516032 | All Organisms → cellular organisms → Bacteria | 516 | Open in IMG/M |
Ga0101569_11634074 | All Organisms → cellular organisms → Bacteria | 521 | Open in IMG/M |
Ga0101569_11635024 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 506 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0101569_10007126 | Ga0101569_100071261 | F006715 | MRRLLLLALIATLASLSINAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVLDDGKPRDISYFTREGQARKPLALILILDLREDGAGRFLKRPEILKAM |
Ga0101569_10007126 | Ga0101569_100071262 | F026116 | LNVTWMPLVQTLSATDDEQVYIFLKEAGDKFNVLVITIDQRDATVVQVTLSPKNLALLLKDPEGTGKAITQEATINDQE* |
Ga0101569_10090097 | Ga0101569_100900972 | F003251 | MQSETYATEKEAKKAAARAYRPAILRLPNGRYACFHAGDVLPQGARAVSRWGTDRWRAY* |
Ga0101569_10110114 | Ga0101569_101101142 | F010137 | MPRGGNKRHHFALNRILIGGLIVYVCAFAILLRNKSFDATDAVVVLIVFGIVFPLIAWIATRRAIPLSISITPSKSQLIVLFGYIIVLSVYLVGGPQWIDQHLPSSWIDSAQTRFFITLAKKLIVFVVIPLAIFRSGFGYRLRDFGIQSEGLRALRGTHLSVVVV |
Ga0101569_10118104 | Ga0101569_101181041 | F027647 | LAVVLAALVGSAGTALAQQVIGGAIQCQTKPCVATGAHRVLFERVGDGVSDRMIAKGGHDHLHARAYTNDRDVAKGNGGHDLLRVNDGDAMDGAIGGPGYDLCVVDAAIEASDTCEAVTYR* |
Ga0101569_10184593 | Ga0101569_101845931 | F049803 | MKISNSIRLIFWFTAIFAIGILVRAESNQKRANTLNTKSAPLRIVDQNGRPAVNGVPSPDGPIFDVTVGPDFAFHPDTVNISV |
Ga0101569_10365538 | Ga0101569_103655382 | F088958 | ARNRRNWFISLVFCACRNSAREFQGHGCKRPTPRSNAGNFAPRLDTKLTNFGKLSSNGPRRPFGYQMKWPMPSDAKSSLWFHEVRPEIVPLHSFCQTLFPTFKASLCEIAMPVTVSGQSAISPVATIANAKPAPSNRWPSCFLDGRHLSISVRLSASTNLKLKRRGNTIL* |
Ga0101569_10366976 | Ga0101569_103669762 | F090345 | MIYKRAGNHWKTLTRFERRETDQGEESQPLRRKTGTPRSLKDITKAKPRRRAPWK* |
Ga0101569_10412231 | Ga0101569_104122311 | F099227 | DFVCARTADRARLMEHFDARVAGKKSKSPLPTRRFRELRILWKGSTIHLDDELWRNKKNKKSSDEIRITIKPSALIVLPPAAAIKT* |
Ga0101569_10513232 | Ga0101569_105132321 | F029521 | MVLLRGGTRDGESTSVDVHVARLYAASEAPGMVDVYEATAELASVRGNDEKAIVYVFVDQEPVTDTTVTHLHMPASG* |
Ga0101569_10589578 | Ga0101569_105895781 | F022723 | RPSAGSTQSVAAGADRGGENSRARKAAVSDSGYNESAPRVAETSPDANELWQKILAKVPAQKAFVRNSAAAAHVLGIEGRNFQLGFAPGDKAMMDILGTHANRRFLETLFHEITGTDWSVKLSVKEELPSKQSLASEDSRSDFKEDPLIQEAIGLFNAQIKS* |
Ga0101569_10591680 | Ga0101569_105916802 | F015992 | MTTPTPLPASETYSTELLPRDTFRTVIAIAIVLLTIGGWIYVMMIPVDRWALSAQTRLWWIEQITGFVLALVCIAIALRKRAFLNVAFWLTIYSMIFDVVRWYFEFKEGQPTIPIALVLYALFIWRLQLARRTVAAEGQVVVV* |
Ga0101569_10616165 | Ga0101569_106161652 | F000776 | MGDIDPLGTRKDGLDIFLDQKVEEGYTIETRTDTHAVIARRPKGLRRIMSGADPGRYVVEVDEDGVAKMRPAEPRRA* |
Ga0101569_10693714 | Ga0101569_106937141 | F073919 | MAKKIREFMTHREPPEHIWMERDENAVIGTARMGQRMVPRIRPFDLLRSTPLSGNRARAMVFEGD |
Ga0101569_10693714 | Ga0101569_106937142 | F061196 | RALAKGREFARRYKEPTIAMVSKYTPFPPEALSIDYDSALSSMTDEGSVADDVLKDEILTRAELIKATNIPDPGKFYDYSIIKKIYPELKKSWKPKL* |
Ga0101569_10843214 | Ga0101569_108432142 | F005005 | SGVVSDHRAGEQVTIFYQPYPQPNLIQRTVVVTTAGGAYSFLIAPEVLTTYQAFWKGAYSAPTTVQVQPKLSIGRDVVWILHAAAGHTMAGRDVLFQRLNTATGQWVTLVKTMLNARSSARVTVRLPKGVNHLRLAMSVNEAGAGYLAGFSPILDWRER* |
Ga0101569_10898680 | Ga0101569_108986801 | F064003 | SLSTSAEVELVVAPRSGISAVQIDLAKAHVLARDSVGREWVARMTGPTTATFEALPVGTYTLEFDLSDLTEPLVPRAPVSLLRVSGKDSKSITVTLDPRPIRMWNGSGSKAPPKTTPSAGDKGSTPPAAVPHS* |
Ga0101569_10934400 | Ga0101569_109344001 | F018074 | GSILEDAMFELLSQPPPPEALAKMTAIEGVRIVPTALTTQQGPDRHLGPEAAGAVLILQATFVDKRGAKRFWMRGAELFQLLAVAPGFIRRFSFSDGPLGMLIAFWRTAADAHAFFSSEEHQAAMRDLYRGRWQYTHFAALWEMTTPHQRVIFCQQCDGVTPATDKVCAGCGTELFDPYAIPSHATA* |
Ga0101569_11081585 | Ga0101569_110815852 | F080337 | MNRTRLSRPSLKITRDVDQRRDGCFTVEVWNPFVSAYQGVPSVQDGLTRVAVLADLISRMWVQRHPKRDLLVDVPDTAATVGPIWAEFRINATTYRSYDTRSDDRPTWASAT |
Ga0101569_11244527 | Ga0101569_112445272 | F003671 | ADVNSAMPADGSDSAGYPLLLYRTAMGPDNNLAYADALLLLQRGADSNRPAADGMTFGKMLSDHRAHFQRTHRSPPAEFTALWNWAEQHGIVPWTP* |
Ga0101569_11252819 | Ga0101569_112528191 | F019255 | MKKKKIETHKIGLVGQAPSRRGDPRKPLAGPNGQKIARLAGLNYDELIACRRRHLNTHYNGKHGKGYAFDHAKGKVKAADILLDWRVERIVL |
Ga0101569_11263468 | Ga0101569_112634682 | F003258 | MRTLTPGQWYLRFTCEQCQQKEILFADLSRGQTKIKATYVVQCSSCSHTGSYDGDDIERYQHPSSPDT* |
Ga0101569_11351271 | Ga0101569_113512712 | F053511 | VSAEQVALIPRCAECEAHWLPTNEEARWRAYLSGDALDEPAEVSFYCPACAERAFGGD* |
Ga0101569_11417792 | Ga0101569_114177921 | F047665 | ENDPRNPSLDFSVLHVLSKNPQLFSDVHDNSLMLALTRALPKKFRSTNIQMLSAEEEAKIEECFRLENLWLLKTYSGTDVDRIYRTYFTPQKAEVRYSDMTDIDLTYRCLGTILELIAFSGDQVRASESEAPAPKFVGD* |
Ga0101569_11433855 | Ga0101569_114338551 | F001868 | MSIEFNFTPELHLVDGRIIRNIEDAIAFAREQETRPGVDRRDEVLHTLERARSIEEVYAAAHLFLGWLEELEVAD* |
Ga0101569_11516032 | Ga0101569_115160321 | F048342 | LELVDKNQLLRLSDRTKLGITTDHPSFRIGAYTLGAARDIWSTDKALLAFGSDLTFYSKPSLLVTIYGNNPISWKAYFRIRPGKMKMTMHSTH* |
Ga0101569_11634074 | Ga0101569_116340741 | F030274 | MIVAVTLITACSKETKKARLLGEADAYFKAGNYDKAKLAYLNVV |
Ga0101569_11635024 | Ga0101569_116350241 | F071204 | QQPVDLTFRENTPVPAAPEIDPLVEQLSELPRSELKEETLQLAAEMRSFEAGSDSAYVTTLITPRLLKNLSEEESDRELDRESTELVQRHLVTWRIYRDRFYRPARAFRDELRKRIGIKNPRREPEIPALDQAALTGAKPITEAADYLIELANRLP* |
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