Sample 3300006683

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300006683

3300006683: Marine microbial communities from the Deep Indian Ocean - MP1090 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300006683 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054904 \| Ga0005506
Sample Name	Marine microbial communities from the Deep Indian Ocean - MP1090 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33543253
Sequencing Scaffolds	0
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Indian Ocean
Coordinates	Lat. (^o)	-29.4862	Long. (^o)	82.3743	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032629	Metagenome / Metatranscriptome	179	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005506_1080705	Ga0005506_10807051	F032629	MQLGFDVATLEGVAAVPDVVKNAETQEKWHPESHVAVVPKEERSTVFYVRMTGVDEITQFGKPIVTVKPPIFKPRFGGDLGEGGIVSSTPKTLELIYNCRKKGTAEVTVSIVLPKYEMVEFALEKECGARIVQAPRTYTANQLLILFVISSTSVLCLIAFVYSKAKQRKNAREAARLARLRAEEEQSEMY*

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