NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006687

3300006687: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300006687 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0092431 | Ga0031697
Sample NameMetatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size42268451
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida1
All Organisms → cellular organisms → Eukaryota2
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationWest of El Salvador, Pacific Ocean
CoordinatesLat. (o)10.09Long. (o)-99.25Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000051Metagenome / Metatranscriptome3266Y
F000073Metagenome / Metatranscriptome2639Y
F006742Metatranscriptome365N
F007073Metagenome / Metatranscriptome358Y
F014836Metagenome / Metatranscriptome259Y
F025479Metatranscriptome201N
F063613Metatranscriptome129N
F082867Metagenome / Metatranscriptome113Y
F090434Metatranscriptome108N
F092248Metagenome / Metatranscriptome107Y
F093743Metatranscriptome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0031697_1000923Not Available821Open in IMG/M
Ga0031697_1017139All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida543Open in IMG/M
Ga0031697_1051197Not Available774Open in IMG/M
Ga0031697_1083302All Organisms → cellular organisms → Eukaryota644Open in IMG/M
Ga0031697_1091245All Organisms → cellular organisms → Eukaryota666Open in IMG/M
Ga0031697_1100257Not Available608Open in IMG/M
Ga0031697_1103874All Organisms → Viruses → Predicted Viral1108Open in IMG/M
Ga0031697_1105674All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii563Open in IMG/M
Ga0031697_1109637All Organisms → Viruses → Predicted Viral1026Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0031697_1000923Ga0031697_10009231F082867MPRKRSSRRVHHINDINHNDTNITVQYRVLKPLTFTNNNLILSVNPTLTELSSTLASIYRQYRVTELSFTFQCSDIAGPFALAMQYVPQIGGVPSAPPTTLAEFEGPAVGYCETGRGREYTYRVPSDILNAMGLNYYSTRVNISPSQDPDILTQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLARLVNGDENEAKDTMIVPHPKNGAGEKLWN*
Ga0031697_1017139Ga0031697_10171392F092248LLRLLLPLSDKVYLTFRDTAEAARSPKDSPDHSKSVGATGGVYKGQGLNQRRLMTCAY*
Ga0031697_1051197Ga0031697_10511971F007073NRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCPVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHITSYTSRLDDCERVGPGFLRRLRGPTAAAGTLNVSIVVVALVAFAALLF*
Ga0031697_1083302Ga0031697_10833021F025479ATIRNMKVFVLLAAVCHFSHSAPQLLYGAYPYVHHAAAVVTGNSVPVAVGGYKAVAGDNGDLKGPVHEVPGLVPALAVHKQESDGAVSLSTGTGALVHTPVIGYYGKRSAEPQLLYSGLAHPYAAYPYAVPTVAVKPLTVNHEVVATGQAVPVAVGGYKAEAGDNGDLKGAVHEVPALFGAPALNKQENANGGALTVGTSAYLKTTISKREAEA
Ga0031697_1088532Ga0031697_10885321F000073LKLARPFVAYMEENAWMRSLVDTGKGNLQWERDIPPAALSNLESLAAKDFKGNLGQIIHDIYQTAHLMFNDMPQGDHKNRAKYRFASKTLMRILPEANRKEVEGLIEKGSMTLDLYEILGTCTWVKPQ*
Ga0031697_1091245Ga0031697_10912451F093743LDQLVSLWRNKRSVTKRDTEGLLSPDEDDFMEFLDDFDDFKEGMATKIGNLTCVMTELKMLTPELKVNIEYYTRSVEEDEDIDVSESEFLQDPEWLERLRTGYQDCYDISESIPSAALMGNPLTKVFGRQMIFFKCAKKTEHMNCALGQMKKWVEEWYGSKDNANATEYGFPEDSYEAAALSLMVLENAASEEERFVGDFFWGS*
Ga0031697_1100257Ga0031697_11002571F014836RNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031697_1103874Ga0031697_11038741F006742KTITSSGNMLRFLTLAALAISAYSDMGAMKKMHKDMMVFNSQSACWGKGNMIYFQVALKEAMESCMQENHSGLLKPANPILALLNQNANTLPFPVNNNNPFQSLPAPAPSKNPFKSSNLNLGAWNQLWNSRNKRQATEGLLQPTEEDFKEFLMDFEDFKGDVASKMGNLTCVLKKMNALDDNLQINMKEYTGDFWNKIDLSQTMAGEDPEWRNMLVTSYKDCYDIARSWPQSTLNRNPLMKVFGRHMVFFKCARKEEAKACGMACANDMLTTLYGSNDAFDWTQYGMPQNKYERAAWTMKIMYGTASHEEHFVHDFFFSDPMM*
Ga0031697_1105674Ga0031697_11056741F063613GLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHAWT
Ga0031697_1109637Ga0031697_11096371F090434RGDNAKGGRDIHILTKKAGKQMMKVDISTEKQINDDQILIKLHDSVEIDNDSALYRRLVGNYRFLTPFNKRTGEYELFVNKKEKNVLLNKFYVKGQVMKDGQKVMNMLVTTNEKPYRVELFLPALLNKIYSDMDEYKMTVEHNPGQLLNVVTNGKKFKGFKISRTGNGNEREIEINGKKLGSGDYTLTDNSFSTKITNAAGDWLEPKITWEGALPKNKDEAANFFAQNNVKVHATGSKRNFDIDLSWKATKPDWDWSTPESMKMNLNIKGKGPRWGDYRLSRDVAIKVENKIIEWDLSGESHFGKGLMATATPIMTEIHLKYLIPQGDLQGKLSKVINGKEY
Ga0031697_1117180Ga0031697_11171801F000051ADAQVFKDELNRIIKYVEELQANTKIECDKYSNDVKYWAEYRTGIKEFSPWLASAEKAATEGLSKPSDLDEVKALNDKVNSFDKTCVNYLKVLQAAEGASLKMTTHTEADNEVKALKERFDKVKAVSETWVKKCEVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQK
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