NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006690

3300006690: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP257 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300006690 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0092415 | Ga0031681
Sample NameMetatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP257 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size54700688
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A251
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Atlantic Ocean
CoordinatesLat. (o)-3.03Long. (o)-27.33Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005505Metagenome / Metatranscriptome398Y
F014115Metagenome / Metatranscriptome265Y
F021791Metagenome / Metatranscriptome217Y
F030135Metagenome / Metatranscriptome186Y
F070259Metagenome / Metatranscriptome123Y
F103104Metagenome / Metatranscriptome101N
F103410Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0031681_1003525Not Available729Open in IMG/M
Ga0031681_1004188Not Available667Open in IMG/M
Ga0031681_1102177All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea578Open in IMG/M
Ga0031681_1107248All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A25591Open in IMG/M
Ga0031681_1116838Not Available704Open in IMG/M
Ga0031681_1124807All Organisms → cellular organisms → Eukaryota737Open in IMG/M
Ga0031681_1127033Not Available752Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0031681_1003525Ga0031681_10035251F030135EELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN*
Ga0031681_1004188Ga0031681_10041882F021791FVDYRIKPHVPPFEQIPANSVKFQSCDYTLQVGYSCVNL*
Ga0031681_1102177Ga0031681_11021771F005505DKSGSYVSWFYDAILKEVQDA*Y*VMFVFLYFFLHH*NGATVNFFFFER*NIVEMDDIRFYGVAPH*YFRPLMGLLVISPTHYEGLMWMGLWFGLLAFLPIFYNLYNSFHRYVAAIPMQNSLLQTSLFITFLMSLGCACSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLA*IIHHLDLIDHYIFQFSQT
Ga0031681_1107248Ga0031681_11072481F014115IKEFTGFEWALMMQTMENAKGTVMFCPMLAILFVGTRMRALQLTQNRGAPQGWVQDGMYMATWAVLIQFLMVLLVGLTTAGPVECDDDGTPKWEPSNKYLVWVALGLKWLTFIFLYGGIIAVITGAYTMTPQTANGRGSVPLVGDGKVPGVGVSVPGYSGLPEPVGPNDVADATGTTGNK
Ga0031681_1116838Ga0031681_11168381F103104VYQFGIPSGCPSTNLVFTRTITLPKDSVVYATGHIITNQKGGRADLYLKINNGMRDYALSEDSTGQWVDLTVNHATTLKKGKYTFQITSNKNARFGCGAGWGDLDIVVVPKFKGVAAYNEPDRKSGCPASRKAFSDLILKTIKVDQTSIIKVTGHIIRTFSGRADAYLKYQRKSTLDTSLTYTNNRRWEDVKLHWTGRLGKGTHTFSIRSNRANAFGCGTAWGDLDILVLPEKL
Ga0031681_1124807Ga0031681_11248072F070259MKSESLVIVNQHVTVNDLSNFAHTAHHARRVVSAGHLLGCVNLYIVG*
Ga0031681_1125107Ga0031681_11251071F103410SLIASLPGPSHKSLQTRRSATTCFLAQPILAHPRASPFDALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRPPQRRTFLHHPEASLEHASFRLPYHKTAQRLFSNTADHFCQHLRRHARVPDPGPTHRHSDDPKITFLPISLAFDRLARGPHGPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSQSTQRPLGHSTLCRTIRPESHIEGLGSRNTIHFKHSKVTRSGTFQPFPTNGWFT
Ga0031681_1127033Ga0031681_11270332F030135REELATLSSFTDIWHSTFAGCQFPDAILPGKEAFDLVAGPLN*
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