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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006698 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0092406 | Ga0031672 |
| Sample Name | Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2049 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 67966715 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | West of Cabo San Lucas, Mexico, North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 15.91 | Long. (o) | -124.47 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014836 | Metagenome / Metatranscriptome | 259 | Y |
| F025846 | Metagenome / Metatranscriptome | 200 | Y |
| F030135 | Metagenome / Metatranscriptome | 186 | Y |
| F063612 | Metatranscriptome | 129 | Y |
| F063613 | Metatranscriptome | 129 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0031672_1001650 | Not Available | 716 | Open in IMG/M |
| Ga0031672_1003335 | Not Available | 688 | Open in IMG/M |
| Ga0031672_1006411 | Not Available | 941 | Open in IMG/M |
| Ga0031672_1184525 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii | 630 | Open in IMG/M |
| Ga0031672_1193081 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 858 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0031672_1001650 | Ga0031672_10016501 | F030135 | EELATLSSFTDIGHSTFVGCQLPDAILPGEEAIDLVAGPLN* |
| Ga0031672_1003335 | Ga0031672_10033351 | F014836 | LGMNKLVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ* |
| Ga0031672_1006411 | Ga0031672_10064111 | F063612 | EGSPADNATSVVAESGLKIPRREMTSKEGVDSSVL* |
| Ga0031672_1184525 | Ga0031672_11845251 | F063613 | LMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA |
| Ga0031672_1193081 | Ga0031672_11930811 | F025846 | TVNLKAVPMVNLTVAMDLVSMAAGHVTAMVTVLMAQTKLTVLLHHVKTRVYGIVAMANVFQHPMYVMDQVNFVTQAGLLTVPMVQMKA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |