NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006704

3300006704: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1785 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300006704 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0092428 | Ga0031694
Sample NameMetatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1785 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size79828428
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii2
Not Available2
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)9.2Long. (o)-163.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007073Metagenome / Metatranscriptome358Y
F010686Metagenome / Metatranscriptome300Y
F014836Metagenome / Metatranscriptome259Y
F061786Metagenome / Metatranscriptome131Y
F063613Metatranscriptome129N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0031694_1004012All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii512Open in IMG/M
Ga0031694_1005175All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii636Open in IMG/M
Ga0031694_1143766Not Available501Open in IMG/M
Ga0031694_1186563All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta598Open in IMG/M
Ga0031694_1208526Not Available803Open in IMG/M
Ga0031694_1212272All Organisms → cellular organisms → Bacteria1878Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0031694_1004012Ga0031694_10040121F063613FMYFILLTMNLITSLLKERGSERSASLFVGLALEGRSGLLALVVGGSTDLSLLLESLDGILVLPSDLVRQTTEASEVATRSESQHTEGLRADHTVDLIVRRRNSLEHLQVSESGGTTSGLVRKHSTDGSPEDLRGSAEVERTTSGVDVASLSKEVLVLELVSEVRTRDVD
Ga0031694_1005175Ga0031694_10051751F063613FMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHAA
Ga0031694_1143766Ga0031694_11437661F014836LMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031694_1186563Ga0031694_11865631F061786YLCETIYPPDNGVSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGLGSLNKKQTQQFFKDALNLVALRKMCKSKDLFQGRKEGAALDEAFRQVNTSGDGRVTFEQFEEFINAYDLDEAVDFLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED*
Ga0031694_1208526Ga0031694_12085261F007073MYACPHGNRLYGVYSNAGFFIGRIEGRTVEGTWYEGGRGDRNDWQGSFHIELSADNREFDGYYYRVSQDGAEIRWREERLGAPWPSNPTNVQCLVPGRESVLGKFYNHPGAGRTPAGYALCQDKYDQIYGSFGSPDGFVEGWSVDSSTGFHGYRYDSNGRSGAYILRAVSDNEVRGFYWRGRLARQNIETSVEEVLTRTSFNAHLDECERVGPGFLRRLRGPSNSAGALTFSVLAIVASVLLVLF*
Ga0031694_1212272Ga0031694_12122724F010686QATKGAWGMSWHQKAMKGVVDCEMPGEAVKQAMIPGFLNYHMLNT*
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