NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300006708

3300006708: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1480 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300006708 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0092426 | Ga0031692
Sample NameMetatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1480 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size79525674
Sequencing Scaffolds6
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella cf. planticola B431
Not Available4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth of Fiji, South Pacific Ocean
CoordinatesLat. (o)-28.41Long. (o)179.14Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000023Metagenome / Metatranscriptome5736Y
F000059Metagenome / Metatranscriptome3008Y
F000075Metagenome / Metatranscriptome2622Y
F007073Metagenome / Metatranscriptome358Y
F014836Metagenome / Metatranscriptome259Y
F056539Metagenome / Metatranscriptome137Y
F063613Metatranscriptome129N
F070259Metagenome / Metatranscriptome123Y
F082867Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0031692_1008426All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella cf. planticola B431502Open in IMG/M
Ga0031692_1234642Not Available741Open in IMG/M
Ga0031692_1242014Not Available834Open in IMG/M
Ga0031692_1242268Not Available669Open in IMG/M
Ga0031692_1245198All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii560Open in IMG/M
Ga0031692_1256015Not Available911Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0031692_1008426Ga0031692_10084261F070259MKSESLVIVNQNVTVNDTSNFAHTAHHARKVVLVGNLVFLFITVISLFIILY
Ga0031692_1214875Ga0031692_12148751F000059RTEELEAISKAIEILGSGAVSGAADKHLPALVQKPVSFLQLGSRSQSPTQAKVAQFLREKGEEIDSRVLSALAVRVAEDPFVKVKKMIKDLIVRLMEEANEEAEHKGWCDTELSTNEQTRKEKTAQVETLHAEIDELSASIAKLTQEITDLTAEIAAIDAAVAEATDIRNKEKAENTVTI
Ga0031692_1221794Ga0031692_12217941F000023VEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLADILAEMANADSHLTY*
Ga0031692_1221940Ga0031692_12219401F056539GLVSCQLALVNPEGRGFSFHDARHGPCGQSPSEPGNRIAWEQNSVHEIEVQILGAAGGGVIVDRYSCVRNGDDENPIEPILPIEGALKVKVPDFDDQIYRLYVRTPSFRCTGDVTMQLVYSAENGQEFFQCQDIVLTYSGASALSMSIFAVIALALMIL*
Ga0031692_1234642Ga0031692_12346421F082867MPKNRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLLLTVNPTLTDLSNTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQVGATPSTLPTTLSEFEGPAVGYCETGRGREYTYRVPSNVLNAMGLNYYSTRVNTAPAQDPDMATQGLMVFLTSTPATPIIAFMHVKYEFQTLEDPSFLAKLMHGEYKESQATDSVFVTGPSKAKAGELWN*
Ga0031692_1242014Ga0031692_12420141F082867MPRKKGSRSRRVHHINDINHNDTNITVQYRVVKPLTFTTNTLLLKVNPTLTELSDTLATIYRQYRVTELSFTFQCSDVAGAFALAMQYVPQIGGNPSALPTQLSEFEGPAVGYCETGRGREYTYRVPSNVLNAMGLNYYSTRVNVSPAQDSDVLTQGLMVFLTSTPATPIIAYMHVKFEFQTLEDPSFLAKLMNNDEKDQNDTLIVPRMNKTQAGGSWNQVQ*
Ga0031692_1242268Ga0031692_12422681F014836VVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031692_1245198Ga0031692_12451981F063613MYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLG
Ga0031692_1254059Ga0031692_12540591F000075ANTYDFMGEDDLLAQLETTLNSAQRSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031692_1256015Ga0031692_12560151F007073MKLFVVLVAFCAAALALDAVGEGFAGSPDQVINPANWHGTWTANNRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCLVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHRTSYTSRLDDCERVGPGFLRRFVRSNCSCWHFEC*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.