NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006722

3300006722: Human stool microbial communities from NIH, USA - visit 2, subject 686765762



Overview

Basic Information
IMG/M Taxon OID3300006722 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052549 | Ga0101786
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 686765762
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size58638823
Sequencing Scaffolds8
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia hominis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047125Metagenome / Metatranscriptome150N
F051936Metagenome143N
F062845Metagenome130N
F067844Metagenome125N
F081453Metagenome114N
F097172Metagenome / Metatranscriptome104Y
F099451Metagenome103N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101786_100037All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales136726Open in IMG/M
Ga0101786_100650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae11535Open in IMG/M
Ga0101786_101104All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis5466Open in IMG/M
Ga0101786_101514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3838Open in IMG/M
Ga0101786_102473All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2420Open in IMG/M
Ga0101786_105006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1246Open in IMG/M
Ga0101786_107675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia hominis837Open in IMG/M
Ga0101786_107949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii810Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101786_100037Ga0101786_1000377F099451MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLTDEDIIKLYKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE*
Ga0101786_100214Ga0101786_10021472F101356VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIMQ*
Ga0101786_100650Ga0101786_10065016F097172KNVTSAYKYHLEGYDKKGYPVSFSKTSFYKDLNALPTVKTGKTTINVPAVTPSVKSVSKKKSDPTYESFVKFKAPKTGKYVVTLTNLRGTDEKSVKTMYYCGFYKFSKTSKKYNLEGIDFDTVGDCDKLFENNYLEKFRAILDNYKVEHPEYEDAIEDTYEDEVHLVNLYSANKIKFTTKLKKGQTYVFVIDNSGSVFPDTPYNDSFYDGSMSCRRNWNYMEAYSFDLDIQLKK*
Ga0101786_101104Ga0101786_1011046F051936KAFGFSVLQKHAVMTPVISIFFEMLIIRYLYIHISIKK*
Ga0101786_101514Ga0101786_1015147F081453MFPFFLFAGENIIEKHISANPVCGTNIKAPEPAVKGTPGRKFM*
Ga0101786_102473Ga0101786_1024734F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPAVKTGKTTINVPAITSSVKSISKEKGNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTCKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDFVNKYPVNKIKFTTKLKKGQTYVFVIDNIGMQKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYKK*
Ga0101786_105006Ga0101786_1050063F062845MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCA*
Ga0101786_107675Ga0101786_1076751F067844MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGREEVSLSPHAVIAPNLPQ
Ga0101786_107949Ga0101786_1079492F047125MDVVLLLMVLGVMSSGFWAADALDHMRKEIIRQEGKRRGWWS*
Ga0101786_111290Ga0101786_1112901F101356VVTPEKDGLSNSKFATTKIKSEGKRSILLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSNTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
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