Basic Information | |
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IMG/M Taxon OID | 3300006832 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052528 | Ga0099611 |
Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159571453 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 102086521 |
Sequencing Scaffolds | 13 |
Novel Protein Genes | 13 |
Associated Families | 12 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 6 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1 |
All Organisms → Viruses → Predicted Viral | 1 |
Not Available | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033081 | Metagenome | 178 | Y |
F046433 | Metagenome | 151 | N |
F051211 | Metagenome | 144 | N |
F054110 | Metagenome | 140 | N |
F077405 | Metagenome | 117 | N |
F092230 | Metagenome | 107 | N |
F094007 | Metagenome | 106 | N |
F095630 | Metagenome | 105 | N |
F095633 | Metagenome | 105 | N |
F099454 | Metagenome | 103 | N |
F103433 | Metagenome | 101 | N |
F103436 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0099611_100025 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 92460 | Open in IMG/M |
Ga0099611_100045 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 73378 | Open in IMG/M |
Ga0099611_100113 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 40819 | Open in IMG/M |
Ga0099611_100157 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 33719 | Open in IMG/M |
Ga0099611_100269 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 23276 | Open in IMG/M |
Ga0099611_100557 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella | 15097 | Open in IMG/M |
Ga0099611_101073 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 10417 | Open in IMG/M |
Ga0099611_102521 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 6422 | Open in IMG/M |
Ga0099611_105725 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae | 3658 | Open in IMG/M |
Ga0099611_110071 | All Organisms → cellular organisms → Bacteria | 2263 | Open in IMG/M |
Ga0099611_110620 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 2158 | Open in IMG/M |
Ga0099611_116220 | All Organisms → Viruses → Predicted Viral | 1400 | Open in IMG/M |
Ga0099611_125437 | Not Available | 821 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0099611_100025 | Ga0099611_10002570 | F103433 | MILVMKEWSKNKPGVVFFFVIWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE* |
Ga0099611_100045 | Ga0099611_10004567 | F046433 | MIELPTSPDVLSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMENCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPEIHEASVLVMAASEDYLVDGISAYSQYGGATYPVEAYYILKNSPDAGDMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGEDFDGLSRFRQLLERE* |
Ga0099611_100113 | Ga0099611_10011333 | F095633 | MKNYENSTEVGRREGLMEGELRTMGALAVEATEEFRKTTVRKEAVLLGSVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDEDRSHKSYKFTCPVLKRYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN* |
Ga0099611_100157 | Ga0099611_10015713 | F033081 | MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYCSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL* |
Ga0099611_100269 | Ga0099611_1002695 | F095630 | MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFILSDIILTAKTYGDTCFMDVEFYSSEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGIIKKDDSIVHQLKCEFMEYVQFLSRSPFCNNLQAALVRCSHNYEQVLLDRGTLNSILGGCVIGGKGWLNMADNTLIGQILKAIKIDVYGI* |
Ga0099611_100557 | Ga0099611_10055712 | F054110 | MNGRRYVVDVRQSWSKYDKPCKIYIVSRMYNEEEYKLTFPHKYKKGKTFKAKQLYKKESEYSSTKQHEVLLFLVKAYKGGD* |
Ga0099611_101073 | Ga0099611_10107310 | F094007 | MKLKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDVNSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGHGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA* |
Ga0099611_102521 | Ga0099611_1025211 | F092230 | MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVRNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILNAIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV* |
Ga0099611_105725 | Ga0099611_1057251 | F103436 | TSKDGWCGKSDAEILNSLRDWVLRCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY* |
Ga0099611_110071 | Ga0099611_1100712 | F051211 | MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKICRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS* |
Ga0099611_110620 | Ga0099611_1106204 | F099454 | MKASKLLWAVIVALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKSLASPSMKVIQQAK* |
Ga0099611_116220 | Ga0099611_1162203 | F054110 | LPSHCVRCIDYSRYCVVLNVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLMFPHKYKNGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD* |
Ga0099611_125437 | Ga0099611_1254371 | F077405 | PRPWQGRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKKVFDWLKIIQK* |
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