NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007056

3300007056: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is



Overview

Basic Information
IMG/M Taxon OID3300007056 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124751 | Ga0101661
Sample NameMarine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69782100
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota5
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter haemolyticus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F001806Metagenome / Metatranscriptome631Y
F044550Metagenome154N
F076185Metagenome118N
F085224Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101661_1010848All Organisms → cellular organisms → Eukaryota1008Open in IMG/M
Ga0101661_1015060Not Available862Open in IMG/M
Ga0101661_1016566Not Available823Open in IMG/M
Ga0101661_1022306All Organisms → cellular organisms → Eukaryota712Open in IMG/M
Ga0101661_1024292All Organisms → cellular organisms → Eukaryota682Open in IMG/M
Ga0101661_1027263All Organisms → cellular organisms → Eukaryota641Open in IMG/M
Ga0101661_1031156All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter haemolyticus595Open in IMG/M
Ga0101661_1036594Not Available543Open in IMG/M
Ga0101661_1039688All Organisms → cellular organisms → Eukaryota519Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101661_1010848Ga0101661_10108481F085224KRLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTA*
Ga0101661_1015060Ga0101661_10150601F044550LHIGAYVMTKRLMRVRKLYSLILDEDAKYCLLKLDTDSKDYVELDHDLDLFALTRLLFQQDNDHYHKIPNKKE*
Ga0101661_1016566Ga0101661_10165662F000999MNIEDLTKEVERIEAKSDFVVSWWAKKYKKTIRRIGNLNKEGCRVWEQGGKKYMCFWDVVIERYTTCIDPVITYKKGLN*
Ga0101661_1022306Ga0101661_10223061F085224FSVTMLELLQMGVPMYYPSKSLLKRWDERYGMMWHRTNSFRQRRAGGFSNIAYGKGSMPDPNDSVNRDALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLAKSNSTPA*
Ga0101661_1024292Ga0101661_10242922F085224YGMMFHRTSKHGQRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIWDARWAEIRRDLAKSNSTPA*
Ga0101661_1027263Ga0101661_10272631F085224YRDLLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGSAPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTA*
Ga0101661_1031156Ga0101661_10311561F001806MDAGTRQKRVEGLEAIKNKALSMAEEGVDSLEVRDFVTAAKKELAYELPDEDAFQKAARAVIAYRRKQGE*
Ga0101661_1036594Ga0101661_10365942F076185NRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDAAANTSNMDAGTYNPETAQDTVVDAGLYINV*
Ga0101661_1039688Ga0101661_10396881F085224YLRPYRRLITRTLNGFSYQVLWRFKAIGMFPYSIWSGVMLELLEMGVPVFYPSKILLKRWRERYEMVYQRSSGGRRSAGGFSNIAYGKDSAPDPNDGVNREASHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA*
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