NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007057

3300007057: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg17ic



Overview

Basic Information
IMG/M Taxon OID3300007057 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124809 | Ga0101644
Sample NameMarine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg17ic
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72073849
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available8
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 92011

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.828217Long. (o)150.820517Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004842Metagenome / Metatranscriptome421Y
F005351Metagenome / Metatranscriptome403Y
F017577Metagenome / Metatranscriptome240Y
F050391Metagenome / Metatranscriptome145N
F065466Metagenome127Y
F076157Metagenome / Metatranscriptome118Y
F079320Metagenome / Metatranscriptome116Y
F087327Metagenome / Metatranscriptome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101644_1004436All Organisms → cellular organisms → Bacteria1614Open in IMG/M
Ga0101644_1006143Not Available1360Open in IMG/M
Ga0101644_1012910Not Available941Open in IMG/M
Ga0101644_1014733Not Available883Open in IMG/M
Ga0101644_1025386Not Available680Open in IMG/M
Ga0101644_1026632Not Available664Open in IMG/M
Ga0101644_1027304All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.655Open in IMG/M
Ga0101644_1031251Not Available610Open in IMG/M
Ga0101644_1032217Not Available600Open in IMG/M
Ga0101644_1041852Not Available521Open in IMG/M
Ga0101644_1043758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101644_1000004Ga0101644_100000425F017577MFPTSSLVSQSGVTTRRQWGSRPSRATLELEFSNITDANASALLSAYHSAEGSFDSLTLPDIVFNGTDATLKTWLSGSATGAGLVWSFTEGSPPTVNSVARGIHEVSISLTAELR*
Ga0101644_1004436Ga0101644_10044364F050391MKLKDPIVLTDELKTEKFRNEKLHKKCNKLLKQSKEQQEEISDLNEYIDSLESQIADYKRRFVPDFDMLSKGGAEVPISDLKIMSEKAKRSMAKRFERKYGEEWVKVNILENKNLK*
Ga0101644_1006143Ga0101644_10061431F076157KGIGGIFFSKNQTTANATKVATISGGIATDKFLPLL*
Ga0101644_1012910Ga0101644_10129101F087327LPSPSSINFHGPDIFGNEFFTKKVEAFSSHKIFGDLKSLLFSAQTESF*
Ga0101644_1014733Ga0101644_10147331F065466TVMSVLLCLLSALVEVNSQTAPYVSFMGANLTNHSYVNLTLVGDARDGRDSVQCHTDLVTCCNSTQGADRGDWYFSNRSRLNFNNDSIDILLYQVRRAQQVDLRRKNISDVSGMYRCVIETNAVHNDSGRETVYVGLYASGGECTHMCI*
Ga0101644_1025386Ga0101644_10253861F065466LVEVHSQTVPYVSFMGTNLPNHSYVNFTLVRDAMDGSDSVQCHTDLVTCCNRTHGDDRGDWYFPNKERLNFWEDPGDIYEQRRAQRVDLRRRNNGDTSGIYRCTIETNAVHSDNFSDTTTRETVYAGLYASGGECAYGEEFEYSQ*
Ga0101644_1026632Ga0101644_10266321F065466LVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGDAAGSSVQCHTDMDTCCGPAQGPDRGDWYFPNGDRLQFSNGPDDIYEQRTAQQVDLRRRNNGDTSGIYRCTIETNAVNDDDGRETVYAGLYASGGEFKHCVHMYI*
Ga0101644_1027304Ga0101644_10273043F079320SWTQFYQEVGNKEQIRKCQTQIAALKKAYNETKTKK*
Ga0101644_1031251Ga0101644_10312511F065466LSALVEVNSQTVPYVSFMGANLINHSYMDLTLVGDAWNGSDSVQCHTDLLTCCSKAQGAHRGDWYLPNGSRLNFNVHPGDIYENRETQQVDLRRRNNGDTSGIYRCTVETNAVHSDNASGTTTRETVYAGLYASGGKRTHMCV*
Ga0101644_1032217Ga0101644_10322171F065466LVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGDALDGSDSVQCHTDLNTCCSMDQGDDRGDWYFPDGTRLGFSGTSEGAYERRQLQRVDLRRIESSTSGMYRCDMDTSRVHSHNNSDNTTRETVYVGLYARGGGCDIVCVEYH*
Ga0101644_1041852Ga0101644_10418523F005351MYHINNPSNWSWSRAFDEVNRTIRKAELEQQIMNHLDNYSGDPKWTNFTEDQKDDHYTILTELL*
Ga0101644_1043758Ga0101644_10437581F004842KAIKEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVAINIPTHNNPVNSGAIVFLINKIIDITKTTTVINASKLLLTTAIKFIRDLFNSIYPKTIFQKSLIRIIFFLKTF*
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