Basic Information | |
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IMG/M Taxon OID | 3300007121 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052602 | Ga0102671 |
Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158944319 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 108893723 |
Sequencing Scaffolds | 15 |
Novel Protein Genes | 16 |
Associated Families | 16 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 3 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F040685 | Metagenome | 161 | N |
F042387 | Metagenome | 158 | N |
F049707 | Metagenome | 146 | N |
F051212 | Metagenome | 144 | N |
F054111 | Metagenome | 140 | N |
F059076 | Metagenome | 134 | N |
F061927 | Metagenome | 131 | N |
F063778 | Metagenome | 129 | Y |
F064818 | Metagenome | 128 | N |
F081454 | Metagenome | 114 | N |
F085821 | Metagenome | 111 | N |
F090517 | Metagenome | 108 | N |
F092232 | Metagenome | 107 | N |
F095631 | Metagenome | 105 | N |
F095632 | Metagenome | 105 | N |
F097526 | Metagenome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0102671_100090 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 43935 | Open in IMG/M |
Ga0102671_100447 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 18501 | Open in IMG/M |
Ga0102671_100466 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 18250 | Open in IMG/M |
Ga0102671_100471 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 18175 | Open in IMG/M |
Ga0102671_100724 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 14544 | Open in IMG/M |
Ga0102671_101047 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 11417 | Open in IMG/M |
Ga0102671_101707 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae | 8238 | Open in IMG/M |
Ga0102671_101894 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium | 7660 | Open in IMG/M |
Ga0102671_107680 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 2670 | Open in IMG/M |
Ga0102671_108821 | All Organisms → cellular organisms → Bacteria | 2381 | Open in IMG/M |
Ga0102671_113958 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1617 | Open in IMG/M |
Ga0102671_120202 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1148 | Open in IMG/M |
Ga0102671_128921 | Not Available | 802 | Open in IMG/M |
Ga0102671_140561 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 561 | Open in IMG/M |
Ga0102671_143372 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 516 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0102671_100090 | Ga0102671_10009032 | F095632 | MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGIALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN* |
Ga0102671_100090 | Ga0102671_10009055 | F049707 | VSEYKSPHNDGHDPYILIWEYGSEVQQEEFVERWSEYEPDTGWTVWHFRLADGRVMTFRALEWEQRDDVNHLTTIYFTPKQKEN* |
Ga0102671_100447 | Ga0102671_1004476 | F095631 | MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSTNINYDRLNLLVVPTAEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYNYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA* |
Ga0102671_100466 | Ga0102671_10046610 | F063778 | MPETISEGAQQKLLQQLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQEMTAARSYLKSCADQIEHAISNVKAIPLDPPPDD* |
Ga0102671_100471 | Ga0102671_1004719 | F092232 | MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED* |
Ga0102671_100724 | Ga0102671_10072421 | F061927 | KKPIFILSAMLILGACSSDSAQKATEKIKNAYSEGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE* |
Ga0102671_101047 | Ga0102671_10104712 | F042387 | MKRIILFFMAGLFLVSCSRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKL |
Ga0102671_101707 | Ga0102671_1017074 | F051212 | MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK* |
Ga0102671_101894 | Ga0102671_1018943 | F059076 | MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYNKNISSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE* |
Ga0102671_107680 | Ga0102671_1076806 | F097526 | MTAGNATAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFSLNASQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE* |
Ga0102671_108821 | Ga0102671_1088213 | F054111 | MNKPLESITHNEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLF |
Ga0102671_113958 | Ga0102671_1139581 | F081454 | MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKS |
Ga0102671_120202 | Ga0102671_1202022 | F064818 | ELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNIVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK* |
Ga0102671_128921 | Ga0102671_1289211 | F085821 | MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLYEYCRALLYTAETSQSQQELVAEIQSHIALLKDLYKKVNKIK* |
Ga0102671_140561 | Ga0102671_1405611 | F090517 | ILSFCGLLLGLLFLASSCKKDTPRLQLSSVELRQTVWNGTLEYKSAKYGPYSVYLSFVSDSVVEVSTFTTTDLTAAHDLEAPCSYTMDDRILTLRTQGDLYLRVSIDRSSWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL* |
Ga0102671_143372 | Ga0102671_1433721 | F040685 | MKKLLFKLFFALAFASISLHGQEKIQQVEFSSFGGMALYSRQYTLNSLKKEFSAKPLMGQKEELSKEVSLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQII |
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