NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007134

3300007134: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19



Overview

Basic Information
IMG/M Taxon OID3300007134 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124800 | Ga0101663
Sample NameMarine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size133445315
Sequencing Scaffolds25
Novel Protein Genes28
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
Not Available9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1
All Organisms → Viruses1
All Organisms → cellular organisms → Eukaryota7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.828217Long. (o)150.820517Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008797Metagenome328Y
F017657Metagenome239Y
F022311Metagenome215Y
F024330Metagenome206Y
F033840Metagenome176Y
F038198Metagenome166Y
F043451Metagenome156N
F051113Metagenome / Metatranscriptome144Y
F051267Metagenome144N
F058078Metagenome135Y
F067211Metagenome / Metatranscriptome126N
F073669Metagenome120N
F082551Metagenome113Y
F082820Metagenome113N
F084109Metagenome112N
F085224Metagenome111N
F097211Metagenome / Metatranscriptome104Y
F101313Metagenome / Metatranscriptome102N
F104990Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101663_1008721All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1875Open in IMG/M
Ga0101663_1020406Not Available1202Open in IMG/M
Ga0101663_1024489Not Available1087Open in IMG/M
Ga0101663_1025814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1057Open in IMG/M
Ga0101663_1033837Not Available911Open in IMG/M
Ga0101663_1038219All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.851Open in IMG/M
Ga0101663_1046371All Organisms → Viruses763Open in IMG/M
Ga0101663_1047210All Organisms → cellular organisms → Eukaryota755Open in IMG/M
Ga0101663_1048309All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas745Open in IMG/M
Ga0101663_1055484All Organisms → cellular organisms → Eukaryota684Open in IMG/M
Ga0101663_1057797Not Available667Open in IMG/M
Ga0101663_1059371Not Available656Open in IMG/M
Ga0101663_1062367All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl636Open in IMG/M
Ga0101663_1063287All Organisms → cellular organisms → Eukaryota630Open in IMG/M
Ga0101663_1064944Not Available619Open in IMG/M
Ga0101663_1065947All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae613Open in IMG/M
Ga0101663_1068529All Organisms → cellular organisms → Eukaryota597Open in IMG/M
Ga0101663_1069302All Organisms → cellular organisms → Bacteria593Open in IMG/M
Ga0101663_1070520All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta586Open in IMG/M
Ga0101663_1070805Not Available584Open in IMG/M
Ga0101663_1071438All Organisms → cellular organisms → Eukaryota581Open in IMG/M
Ga0101663_1079390Not Available540Open in IMG/M
Ga0101663_1080647All Organisms → cellular organisms → Eukaryota535Open in IMG/M
Ga0101663_1081176Not Available532Open in IMG/M
Ga0101663_1081993All Organisms → cellular organisms → Eukaryota528Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101663_1008721Ga0101663_10087212F051267MAICWINYTNAEAIFTYANHEQEMAETEFRLDVSADESEVISKLIKSYFDMDNAEDREMISDIVKVSFCFSDTEYPQKLKKKEAEKFWELPTMKAFLERNGKYYFDEEQRDDVETSIKELLDCWKEEIV*
Ga0101663_1020406Ga0101663_10204062F101313MTSALKREFKVGDEVCHTNKFSTGNNFQRKRKGVVLGIERRPVKDGKLRTYIEVLWNTSSVPCFHASHALLHLSEREGAIKEASKCIAN*
Ga0101663_1020406Ga0101663_10204064F024330SNPNSRPKKVTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDNRKAYEDACDVCGWNYKDKEARTLYVTDGTYISPTAIKRMRELS*
Ga0101663_1024489Ga0101663_10244892F043451MPNIQPWLYPPHPSPDRVAYTPTRSAHILEYQEEMIDAEGNVYWKTVDSTTLGGATSVKEFLEQIKDFYESKSCREDKML*
Ga0101663_1025814Ga0101663_10258142F067211MSFLEPVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDKAFELAVESVADGELSATEIKKLAVHMAQSWLPGAAAQKVRLLEQNGMPLEQRKAAEDITAKVNTAS*
Ga0101663_1033837Ga0101663_10338372F038198MAIEKVTLKNVRVTVNFDIDLDTLKRYLETKERDFDDVMAIYDMICTQSDRLNEQGEPENIRAYFDIDPETLNLVEDEVRKSIKFKTSFHPHLKRIK*
Ga0101663_1038219Ga0101663_10382192F073669MIEPNMKLLEAMRTEANLCYERGDDEDGNALVKSIFDQIFPGLVEEAKRNPTIIYTLIIHSNTEKDEMKANHYRSILKYLKDNGVKF*
Ga0101663_1041090Ga0101663_10410901F104990MNSKERKWTIDRLDDSDWQRMKEHMDKKFPNMKLPDVESFKELGRLYGLATEYHEKKLN*
Ga0101663_1046371Ga0101663_10463712F058078MEYEIPNEGGTYILNPKTGKRKLVQQTKQAEIPTEVTTDGTTDKEESNSN*
Ga0101663_1047210Ga0101663_10472102F085224RPARLRHPRAHFRDYVTGISEAFNNFSYRDLLRFKAVVMFPYSVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFRERRAGGFSNIAYGANSAPDPNDSVNHEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKSNSTPA*
Ga0101663_1048309Ga0101663_10483093F008797YFEFFLACKLGMTIGRLRTELSDAGLVHFVALYEVKEEQEEKAMNLVLK*
Ga0101663_1055484Ga0101663_10554842F085224QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGARRAGGLSNIAYGKGAMPDPNDGVNREALHYWLEKSEFYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIQRDLTKFNSTPA*
Ga0101663_1057797Ga0101663_10577972F043451MITGKCILVETMSNIQPWLYPNDPFSVDRVVYTPTLSAHILEYQEEMIDAEGNVYWKTVDSTTFGGSTSVKEFLEQMKDFYETKSCRKDKMQS*
Ga0101663_1059371Ga0101663_10593712F033840MSVFDYKLNRRQQLVKKGEMIDNNIDFSGRTNTDFTNKFVAKMRDTNNLYTRESPGQFDDQKAEVVRKNLLTQADDRGQFNDPSQQVRSDAFLAKFRNSVLVNEEEKPSRQGILQYMQGNPKDPPVNGQFPTDGVKVS*
Ga0101663_1062367Ga0101663_10623672F051113KGLLMAGADRAIRELMFIFKDDPIETPLEEATMSVWARMQLEE*
Ga0101663_1063287Ga0101663_10632871F085224FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSVGGFSNIAYGADSAPDPNDGVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIKRDLTKTG*
Ga0101663_1064944Ga0101663_10649442F082551MAQSYPIWIDVSGDNYKKDKSFGSRDHVSLDIKVGSSKTYSNDLARVSIHMREDEAGNRTFARALDGLVVRSAVMTKEKKFYHRDPRKASA*
Ga0101663_1065947Ga0101663_10659471F085224VMFPYSVWSGVMVELLQMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGERRAGEFSNIAYGKGAMPDPNDSVNREALHYWLEKSEWYNWNVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKTSSTPA*
Ga0101663_1068529Ga0101663_10685292F085224QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTG*
Ga0101663_1069302Ga0101663_10693021F097211GEGYPTNNTVVSGGFAVSAVGADSRIPNGTVASTNIIDSSLLEKTTAQTQWKLFATTDASPVVQGSGVYDPRAANNFLSGDNKALAICEVCWILPDSPPERQDVALQPDGLTESSVYTSTSPS*
Ga0101663_1070520Ga0101663_10705201F085224SIWSGVMLELLEMGVPVFYPSKILLKRWHERYGMVYQRSSGGRRSAGGFSNIAYGKDSAPDPNDSVNPEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA*
Ga0101663_1070805Ga0101663_10708051F017657MEDNRKEALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPGINPNPKPEGPVINPNVFNPGNIYPGISGNTKLAATWNPMMDPAAG*
Ga0101663_1070805Ga0101663_10708052F082820YLKMRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAIGEAQKLLKDQLTKSIPSLPSATGDVVPAKPSLPKF*
Ga0101663_1071438Ga0101663_10714382F085224SIWSGVMLELLEMGVPVFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLDKAEWYNWDVRYFDSPADLHEQLKAADFEALHRDVLKTRARMDKIRDERWAEIQRDLTKTSSTPA*
Ga0101663_1079390Ga0101663_10793902F084109THTSLPVEMSKRDYEARIRELLEQCEIIKMPYEVTKEGQFNSHLDDFIYNQAIADEIEDVLNHCVWKDDGKIFFQLTSLERYFKKIQFKEFSSTQMGSLIRDRGGDSKKVRINPNTIKNLFYIPDPKPKQEAKLNVPQVKSDVPF*
Ga0101663_1080647Ga0101663_10806471F085224LELIEMGVPMFYPSKRLLKRWDERYGMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWVEIRRDLSKSNSKPA*
Ga0101663_1081176Ga0101663_10811761F022311MPKSITDSSYDPIYDQIRGILGEHFENYCFIVMNEQGELFYDYNHLPAGRMLLHEMQKELSEGNINFEWEFENDPDDLEEEE*
Ga0101663_1081993Ga0101663_10819931F085224PYSIWSGVMLELIEMGVPMFYPSKSLLKRWDESYGMMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTSSTPA*
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