NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007204

3300007204: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763961826



Overview

Basic Information
IMG/M Taxon OID3300007204 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052643 | Ga0103275
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763961826
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size97536835
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 512701
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. YR0051

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F040685Metagenome161N
F041827Metagenome159Y
F043990Metagenome155N
F047508Metagenome149N
F051212Metagenome144N
F063778Metagenome129Y
F066860Metagenome126N
F073671Metagenome120N
F076191Metagenome118N
F081454Metagenome114N
F081456Metagenome114N
F097527Metagenome104N
F098763Metagenome103N
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103275_100003All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae281336Open in IMG/M
Ga0103275_100260All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria35688Open in IMG/M
Ga0103275_102614All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2796045Open in IMG/M
Ga0103275_103550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces4550Open in IMG/M
Ga0103275_104952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3285Open in IMG/M
Ga0103275_105017All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis3234Open in IMG/M
Ga0103275_106929All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2331Open in IMG/M
Ga0103275_108100All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.2010Open in IMG/M
Ga0103275_111746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1397Open in IMG/M
Ga0103275_117223All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium947Open in IMG/M
Ga0103275_117533All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium930Open in IMG/M
Ga0103275_121455All Organisms → cellular organisms → Bacteria758Open in IMG/M
Ga0103275_122134All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium734Open in IMG/M
Ga0103275_125465All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae → Porphyromonas catoniae ATCC 51270637Open in IMG/M
Ga0103275_129137All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium552Open in IMG/M
Ga0103275_131500All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. YR005505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103275_100003Ga0103275_100003124F073671MSSNQAEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR*
Ga0103275_100260Ga0103275_10026037F076191MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLKDA*
Ga0103275_102614Ga0103275_1026141F098763MDRRASLRILSPALYLATKLFEAVVRTTISYDSSDEVEGKGGMNAIPTTVDE*
Ga0103275_103550Ga0103275_1035501F063778ELIRQLQDALNLVKNADTSAHDVAAITHSAADGHQLTEVMLQQMTAARGYLKACADQIEYAISSIKAIPLDPPPED*
Ga0103275_104952Ga0103275_1049523F081456MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLVVTAIGFLFAAMTVILYTISAE*
Ga0103275_105017Ga0103275_1050173F101358LTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPIHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0103275_106929Ga0103275_1069292F066860MTTKKQKLQKQQTIDRWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAATFGIAEDREETTEDVAI*
Ga0103275_108100Ga0103275_1081002F101358LTQPITTDGTPQERATHPDTHSIPKRDDVPQYLWNVLRSSGQLDEGWIDTEIIDENGVVLVRMTKPVHRSNIDKLEKCVPLAVLQEQNLDFTNAYLQKAYGVMIKDGRLQPAADTTHATTSSQEHQTEVLPAQGGDTHEHRSGDSARQLVGSVAAKASDTEVDNSLLVERALKR*
Ga0103275_111746Ga0103275_1117461F097527MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCG
Ga0103275_117223Ga0103275_1172232F043990MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKDDLPPNGIPKQFLNNTNGYYKYIGDENDDRSFDILIVDTTRKEI
Ga0103275_117533Ga0103275_1175331F081454MKAFKFILLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQSNNVPFILEYTKYFYKAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFL
Ga0103275_121455Ga0103275_1214552F040149VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF*
Ga0103275_122134Ga0103275_1221341F041827LASLYEFGSNVRFQYKNGNQINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITHQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPT
Ga0103275_125465Ga0103275_1254652F047508HIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0103275_129137Ga0103275_1291372F040685MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLKDSPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDH
Ga0103275_131500Ga0103275_1315001F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIEKIIYSQTGGDTGGKDVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKINLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLD
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