Sample 3300007315

3300007315: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771 reassembly

Overview

Basic Information
IMG/M Taxon OID	3300007315 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052722 \| Ga0104930
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	120670921
Sequencing Scaffolds	13
Novel Protein Genes	25
Associated Families	23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046433	Metagenome	151	N
F054109	Metagenome	140	N
F071328	Metagenome	122	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F084362	Metagenome	112	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F094007	Metagenome	106	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103430	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y
F105378	Metagenome	100	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0104930_100003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	237799	Open in IMG/M
Ga0104930_100010	All Organisms → cellular organisms → Bacteria	122596	Open in IMG/M
Ga0104930_100066	All Organisms → cellular organisms → Bacteria	70501	Open in IMG/M
Ga0104930_100108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	57578	Open in IMG/M
Ga0104930_100239	Not Available	39990	Open in IMG/M
Ga0104930_103704	Not Available	6227	Open in IMG/M
Ga0104930_104038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5728	Open in IMG/M
Ga0104930_107721	Not Available	2846	Open in IMG/M
Ga0104930_113931	Not Available	1451	Open in IMG/M
Ga0104930_120025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	961	Open in IMG/M
Ga0104930_122971	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	832	Open in IMG/M
Ga0104930_127096	Not Available	705	Open in IMG/M
Ga0104930_133550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	551	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104930_100003	Ga0104930_100003115	F092232	MNTQAKFIADYNDKNRPKFNDIFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEETLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0104930_100003	Ga0104930_10000314	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTREYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGISNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPINIIPTNTIPIEAIRRDFDNISDSNYILTAGNVIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLSNRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQEFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0104930_100003	Ga0104930_100003159	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNVFNLYKDIINLDDVSLLAELRHTEWYKDWFTSDKRNSDLIDLSKFNFRVLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLSEDEDLELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*
Ga0104930_100003	Ga0104930_100003199	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKDLMNESAMTAFKYMSEEDIHNVVDDINSRSVLARYLSRM*
Ga0104930_100003	Ga0104930_100003207	F103435	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTARDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEVEFYEFYKAIDRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*
Ga0104930_100003	Ga0104930_10000340	F081455	MEITNTENKNLFQQLSSLGFDVNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYDSFNKIKESNTDKVVRAVRLLNYKMADQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDVDHHLISSARK*
Ga0104930_100003	Ga0104930_10000341	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR*
Ga0104930_100003	Ga0104930_10000344	F099453	MNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEVIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNIIYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRSYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0104930_100003	Ga0104930_10000365	F092229	MNEEYRFDHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLTDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLYYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTRSNPSGYILNHKLELVKG*
Ga0104930_100003	Ga0104930_10000392	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDTEYIKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0104930_100003	Ga0104930_10000398	F095629	MEVKTMRELIICACLFGCFGVAHADAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK*
Ga0104930_100010	Ga0104930_100010134	F094007	MKLKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0104930_100010	Ga0104930_10001024	F089055	LKVEKMNSTPECVTKTPEIESRKKEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIKMDFADNGAVDFCNQALGSYGKSLDYINNSPLETVQAIGNSLQLLREYKTKESCR*
Ga0104930_100066	Ga0104930_10006639	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKSLQDNGFFVLSDIILSAKTYGDTCFMDAELYGPEAKKAYDEVLREFDKLVIPEDDILRAAGECGIEMNRNIAEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDERHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVKS*
Ga0104930_100108	Ga0104930_10010825	F046433	MIELPTSPNALSELSPVAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKRYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIGKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYSVEACYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKG*
Ga0104930_100239	Ga0104930_10023918	F103430	MKQITIKAFIGSNNKTKELEVDKIISTVNTNHEAFTLQYPVIGCWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENKINLI*
Ga0104930_100239	Ga0104930_10023948	F084362	MSLMNCTFTVRWSDDKNKAHAKTYDTEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0104930_103704	Ga0104930_1037042	F084362	MNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAGQKGFWWEK*
Ga0104930_104038	Ga0104930_1040388	F054109	MAGRPKTKRGMKVHTAFKIYPDDKARAQAMADKLELSLSAYINKAVLEKVERDEKSEA*
Ga0104930_107721	Ga0104930_1077212	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVINGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0104930_113931	Ga0104930_1139312	F085820	MRSTFYLFAVLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0104930_120025	Ga0104930_1200251	F046433	SDPSFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMEDCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNKMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVRERISVFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGYEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLERE*
Ga0104930_122971	Ga0104930_1229711	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINLYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0104930_127096	Ga0104930_1270962	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYDNPTTCVRSAHDNRELKDIVHLLILAGGNEIPNNHYGFLRDA*
Ga0104930_133550	Ga0104930_1335502	F103436	MITTSKGGWRYKSDFEIFDSLRDWVMKCDVKYVKRDALDKIDYARSLWCRAEYVAAVHLLDENEVFLKKSDWPYYALGIQILKARKH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007315: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences