NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007524

3300007524: Human stool microbial communities from NIH, USA - visit 1, subject 763496533 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007524 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052757 | Ga0105481
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size183776594
Sequencing Scaffolds19
Novel Protein Genes23
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D261
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F039198Metagenome164Y
F044554Metagenome154N
F047755Metagenome149Y
F051936Metagenome143N
F068811Metagenome124N
F074964Metagenome119N
F076189Metagenome118N
F078004Metagenome117N
F081354Metagenome114Y
F088920Metagenome109Y
F088921Metagenome109N
F089053Metagenome109Y
F090484Metagenome108N
F090514Metagenome108N
F092227Metagenome107N
F098313Metagenome104N
F099269Metagenome103N
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105481_1000048Not Available154065Open in IMG/M
Ga0105481_1000301All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes54138Open in IMG/M
Ga0105481_1000409All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii43618Open in IMG/M
Ga0105481_1001953All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis12086Open in IMG/M
Ga0105481_1003022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes7950Open in IMG/M
Ga0105481_1005386All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D264532Open in IMG/M
Ga0105481_1008640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2837Open in IMG/M
Ga0105481_1010900All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/742300Open in IMG/M
Ga0105481_1011284All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2234Open in IMG/M
Ga0105481_1012501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2046Open in IMG/M
Ga0105481_1013147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1957Open in IMG/M
Ga0105481_1015594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1684Open in IMG/M
Ga0105481_1016489All Organisms → cellular organisms → Bacteria1605Open in IMG/M
Ga0105481_1017138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1553Open in IMG/M
Ga0105481_1021422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1282Open in IMG/M
Ga0105481_1021928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1257Open in IMG/M
Ga0105481_1030162All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium957Open in IMG/M
Ga0105481_1036052All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia821Open in IMG/M
Ga0105481_1040132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales749Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105481_1000048Ga0105481_1000048151F098313MNGGILRLFYLPLLKKRMKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFVNLVRDKGDDRAFKLLWNFQSENEMTMRNICHESFHAAMSVCQYCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN*
Ga0105481_1000048Ga0105481_100004818F090484MIKISFRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGEPNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKEKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKNDFNFFLKDNTHILNFLNAEEVVSEDGEILGIDRKKTKEEEARSLASIMAKEAHKNFWDGYEQSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSQEKIATVKSGMAEAEACCDEVGTSVAGVCGRISRRMKSYNNTVADKKADFNEVRDMYAEFAGDMAKAVGSVNEDICTYVKAEQFKEKIENMDITIRSLSNNNTTDNDTGLDGESIFKDIPFEELSFCNDTYLYPISHYSSFQ*
Ga0105481_1000048Ga0105481_1000048191F099406MAEVGYNSKFEGLEVDSRLEKVIQAEVATAEAEGKGGLIPAPPAGSQDGSKALLSNMTWGDNITKQYVDNAVSAAGWKKQIVTVLPNVDEAADNVMYLVKDDLASTETGNVYNEYILVTDPEGVKSLESIGMVSTSVDSTYLDLSIFPSTSGTLDEDSFAKVMDAYNNNITLGKLSFNYFSLDYFLDNDNSELKIIAVLFNNTNLEEEVPGSYIDIEMVTYVVAQDKTYRAIANTVTLFNTMLSYLEFMAKTPNVVTTLASLPTDAYNIIANVASATNLSMSVSSEYAGREWQVRVNNTTGSDITQPLPTTGQFQSMSGDSVTIPVNSFIELSIWYINDKLVIRVGENA*
Ga0105481_1000048Ga0105481_100004841F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKSLEIPLEYATKVAALAKDKKRLVAVCSQMLPKVGDTFIKFFLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGSEYKPFGFATAEMLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0105481_1000301Ga0105481_100030137F039198MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEEYSVAIFVSGKENYPEILEKIITKQEGLNRNVC*
Ga0105481_1000409Ga0105481_100040938F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLSPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
Ga0105481_1001953Ga0105481_10019533F044554MAVCLPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0105481_1002662Ga0105481_100266212F078004LSSRNTDLLFRKSSTGGLSAVAGSAALDIHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF*
Ga0105481_1003022Ga0105481_100302214F039198MQITSCEVTNTKYIQIYLTKEELEKQETKELINKYKQEKYSVAIFVTGKENYPEILKKIVTKQVELNKNVC*
Ga0105481_1005386Ga0105481_10053861F051936VLFFPLALRGKAFGFSVLQEHAVMTPIISIFFVMLIIRYLSIHISIKK*
Ga0105481_1008640Ga0105481_10086403F039198MQITSCQFTNTKYIQIYLTEEELQKQETKEIIKKYKKEKYRVAIFVAGKENYPEILEKIITKQKELKRNVC*
Ga0105481_1010900Ga0105481_10109003F088921LEAAKKIAVKTSALGAAIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMWSK*
Ga0105481_1011284Ga0105481_10112844F047755MENEKVKYLIDMINDMDKKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFNKYPLITFAMAKLMEMNATEQNKIAMYLFNCITWI*
Ga0105481_1012501Ga0105481_10125012F092227MNEQKRKRILRVGCLILAGVFLLSVMGSVILMFLV*
Ga0105481_1013147Ga0105481_10131474F081354IFPKSRRRSPLKKGAGCKNPLENGKAEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL*
Ga0105481_1015594Ga0105481_10155942F039198MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKKEKCSVATFVTGKENYPEVLKKIVIKQKELNKNVC*
Ga0105481_1016489Ga0105481_10164892F099269VGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0105481_1017138Ga0105481_10171382F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVLLILNENVSETLCIFSIDKTNCCRI*
Ga0105481_1021422Ga0105481_10214221F026592ASPRGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0105481_1021928Ga0105481_10219283F088920LFVKWNPKNHHFIFLFLAFFSFVSANLHHYSAFGAGLILHLILHFSPKAAIFAPKRAILLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0105481_1030162Ga0105481_10301622F089053MEGPRPDKFAFSVKLERVVDGCRPAKGCVKKWLYVFANGQPELSTAEEANVKNMEASL*
Ga0105481_1036052Ga0105481_10360521F051936VLFFPLALRGKAFGFSVLQEHAVMTPVISIFFATLIIKYLYIHISIKSNYHAQ*
Ga0105481_1040132Ga0105481_10401322F076189RALFFISFPPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISVCFDLCAVQSAQKQLHMLCNFHENTLGLLIFYTNYAII*
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