Sample 3300007594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300007594

3300007594: Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_B metaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300007594 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125882 \| Ga0102774
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_B metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	67542494
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	5
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003068	Metagenome / Metatranscriptome	509	Y
F003492	Metagenome / Metatranscriptome	483	Y
F005911	Metagenome / Metatranscriptome	386	Y
F016280	Metagenome / Metatranscriptome	248	N
F017397	Metagenome / Metatranscriptome	241	N
F018809	Metagenome / Metatranscriptome	233	Y
F019484	Metagenome / Metatranscriptome	229	Y
F019655	Metagenome / Metatranscriptome	228	Y
F021211	Metagenome / Metatranscriptome	220	Y
F021310	Metatranscriptome	219	N
F022419	Metagenome / Metatranscriptome	214	N
F023863	Metagenome / Metatranscriptome	208	N
F026877	Metagenome / Metatranscriptome	196	Y
F036277	Metagenome / Metatranscriptome	170	Y
F037241	Metagenome / Metatranscriptome	168	N
F042354	Metagenome / Metatranscriptome	158	Y
F051183	Metagenome / Metatranscriptome	144	N
F052625	Metagenome / Metatranscriptome	142	Y
F077350	Metagenome / Metatranscriptome	117	Y
F093978	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102774_1000520	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	527	Open in IMG/M
Ga0102774_1001926	Not Available	1671	Open in IMG/M
Ga0102774_1003520	Not Available	686	Open in IMG/M
Ga0102774_1004558	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	784	Open in IMG/M
Ga0102774_1038916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	532	Open in IMG/M
Ga0102774_1091214	Not Available	1391	Open in IMG/M
Ga0102774_1099525	All Organisms → cellular organisms → Archaea	734	Open in IMG/M
Ga0102774_1103532	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	506	Open in IMG/M
Ga0102774_1119594	Not Available	553	Open in IMG/M
Ga0102774_1132035	Not Available	700	Open in IMG/M
Ga0102774_1135662	Not Available	567	Open in IMG/M
Ga0102774_1144768	All Organisms → Viruses → Predicted Viral	1393	Open in IMG/M
Ga0102774_1148103	All Organisms → cellular organisms → Eukaryota → Sar	587	Open in IMG/M
Ga0102774_1150219	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1005	Open in IMG/M
Ga0102774_1155858	Not Available	553	Open in IMG/M
Ga0102774_1167651	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	771	Open in IMG/M
Ga0102774_1171786	Not Available	688	Open in IMG/M
Ga0102774_1184766	Not Available	765	Open in IMG/M
Ga0102774_1197363	Not Available	726	Open in IMG/M
Ga0102774_1198202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2360	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102774_1000520	Ga0102774_10005201	F016280	DLALAKKHGSEPLKITSTEVDSRNVFDHASAELAKHGLDAPPTELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYGTHDVVLEAVTGKGLKLDSNTLHALLRMLHCRPARFVKLGLVEDVKAARQAYKLGGRAC
Ga0102774_1001926	Ga0102774_10019261	F077350	LEVAVTDSALANQIQKTEADPNQADIQALLEELEGKLRGALDVLTPSVKAMCDNLHKAAADIRTDKDATMLWGTLNDLQVFLSLVQQICTSVGTQGPQVVEFDNALGESLGALETVVVDSEDPEEVALFIEESLIRAFDKWPEAEAELRKIAEV*
Ga0102774_1003520	Ga0102774_10035201	F005911	KKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDDVFHNGKFISLKVMVKKAIIIAADDPTATARAGSDMPYDLENSGVLIKYADADGNVIAATETGSGTDTIVADVQLFVNLAGTPDANSNSPYTDGDPFYYILMETANSGLAADDITVNLVQFPAGILATNDGGPQAEVSVILPQDDEE*
Ga0102774_1004558	Ga0102774_10045581	F021310	QATMNPSNNISMKDTRDGVVVQADGRTLLAKLVFAGSARLAECGLGIDELRAAFKKAHGEEASKGTLTYQLNEIDEDALQLLDDADLALAKKHGSEPLKITSTEVDARNVFDHASSELANHGLDAPPTELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYGTHDVVLEAVTAKGIKLDANTLHALLRMLHCRPARFVKLGLVEDVKAARQAYKLGGRAC
Ga0102774_1038916	Ga0102774_10389162	F036277	LYSNPFVDKSTQYELHSPNKNKIDLNYLGSASLNV*
Ga0102774_1091214	Ga0102774_10912144	F021211	MAKEKKVDLRQEAETKMESLVEQHNTLVQELQSANERLAEVKQMIIEHQGYMKGLEACEKDCEVK*
Ga0102774_1099525	Ga0102774_10995251	F003492	MAELLTDDIIIEKLNEDGIMQEPDGPWLLEYIYENYGGQLDTTSDFVDDKWTLKIYSESTYDGYDIFWCTYEDRPYVSQDGYYYEDYSDWSTKALEELVNGSNVWVENHIWDSMEWDFNAEAEQWWQDVYEELYDEKKEELLDSGDYYIEKED*
Ga0102774_1103532	Ga0102774_11035321	F037241	ICHKMRRLLLPLLLASTTAAKSTYWKEVEAKKRRPAAAAYCPKRCFTTEASGDEKREVADLTCCSTAQGTIFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPRSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA*
Ga0102774_1119594	Ga0102774_11195941	F042354	VTSAFSQASVSAGLSYGSFNYDISGTKYTGDGGVLSLDGQLSPSLSYSLSMSDGKFDDVVFSDSQGSITYNVYPNIGIHFMGSQIRLSTVQETDTSLGVSYNINTSSLGLKVFVGSDINNYGKFYTYGTKINLGVAQGSSLILGYKTEDRKQKVTTMDVSFVYDLTSSLGLNLGYKSTETKNA
Ga0102774_1132035	Ga0102774_11320351	F003068	YKDKIMKKILAIVSVLSLFTFSANAIDTSDVSVTAGISANSAVYGATGKETNRDESNAIRDVENESGVFTDSHMSGFLELNVGEFISLGYEHTPDSITTPQNKRVTNQNSETTVSADFNDLNIAYLKLNIPGGVYLKAGYVETDVDVKEKMASGSTYANVSTEGSLIGVGYSQALQGGVAIRLEGSYMELDDVMTSNGVAKDGATVANGGRNQIDVSDMEGLNGKIALTFTFG
Ga0102774_1135662	Ga0102774_11356622	F018809	MGGAMIKNLIIIGLFTIVVTQTDIGINDVFNYVELALDKLQEMVYTMKRSV*
Ga0102774_1144768	Ga0102774_11447681	F051183	MAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSVRLKLEDKDNGYNYTTFINQNFEKDVNGVVTGMAFPDDLNTLYLAANKDINVSDVGEVNVDTLIDGEVACINYAATGKYKRATWGVVSSPNDTAELEKKFMAQIAKGYPKNYQKPQETMVEEMLGNREPVEAKETVDDLPF*
Ga0102774_1148103	Ga0102774_11481031	F019655	KAQEKASKLQKAAEDKGDLADTTATRDADQTYLDDLVAECTQKSSDFESRQQLRTDELAAIDKAIEILSSGAVSGNADKYLPSFVQTKTSVSFLQLSVGSKKPSQARVAEFLREKGSAINSRVLSALAVKVAEDPFVKVKKMIKDLIVRLMEEANEETEHKGWCDGELGANKVQREAKTEDVNTLTAQADQLTAD
Ga0102774_1150219	Ga0102774_11502191	F017397	LHKYCYPWLVLFFVVAPIMATVIYFQATRLDQCHRTKYSSKMWEKVGVGEEWCRLGPTVGLISDPIFVCYGIYMILMSIASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKRVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARNAGF*
Ga0102774_1155858	Ga0102774_11558582	F026877	MKTITLPDGTKEHTLPKWIGIQKPGEPMVKTKWRRTDMEYHNINGYTQMRNSIGSFTCTCKGYIFRKKCRHIEELRP*
Ga0102774_1167651	Ga0102774_11676511	F023863	MAMLALSSLSAAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMGA
Ga0102774_1170129	Ga0102774_11701291	F022419	MSLRYAAILAPACAFTHPQQPRRIVVRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSQFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLADTPLGQRRQLGTGTPKEDAPTKTDESTSSL
Ga0102774_1171786	Ga0102774_11717861	F005911	GGRKTMSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDADNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATKRTIDLTQFPTGILATNDGGPQAE
Ga0102774_1184766	Ga0102774_11847661	F052625	MSPEVALLHDTWESIKHHVPKKERLNIAEVLVRTFDDNVNISEVEDHIMEFDSIMKAAIVSHFDIGLDEDEEDGDWE*
Ga0102774_1197363	Ga0102774_11973631	F019484	YFLTILGGSLKKIAKKITTRVPISKNAYTSASIFISNN*
Ga0102774_1198202	Ga0102774_11982023	F093978	KKAQLLLDEPLMKEAFNYLKTRYREEIFNTSYSDHNQRQVLWMAYNMVEKIKGHLESVMNEGKLAAKELDQLQDLTK*

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