NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007635

3300007635: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG



Overview

Basic Information
IMG/M Taxon OID3300007635 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114514 | Gp0125918 | Ga0102925
Sample NameSalt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size689817367
Sequencing Scaffolds22
Novel Protein Genes25
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW231
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter → unclassified Psychrobacter → Psychrobacter sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSalt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSouth San Francisco, USA
CoordinatesLat. (o)37.4969Long. (o)-122.1331Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000695Metagenome931Y
F001506Metagenome / Metatranscriptome681Y
F005874Metagenome387Y
F007072Metagenome358Y
F020197Metagenome / Metatranscriptome225Y
F032166Metagenome180Y
F035190Metagenome / Metatranscriptome172Y
F036014Metagenome / Metatranscriptome171Y
F038111Metagenome166N
F050177Metagenome145N
F052252Metagenome / Metatranscriptome143Y
F056035Metagenome / Metatranscriptome138Y
F059653Metagenome / Metatranscriptome133Y
F075754Metagenome118N
F086685Metagenome110N
F097996Metagenome104N
F100427Metagenome102N
F100495Metagenome102Y
F101126Metagenome / Metatranscriptome102Y
F104555Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0102925_1000273Not Available27075Open in IMG/M
Ga0102925_1015174All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW233964Open in IMG/M
Ga0102925_1062290All Organisms → Viruses → Predicted Viral1749Open in IMG/M
Ga0102925_1075862All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1551Open in IMG/M
Ga0102925_1087506All Organisms → Viruses → Predicted Viral1421Open in IMG/M
Ga0102925_1093877All Organisms → Viruses → Predicted Viral1360Open in IMG/M
Ga0102925_1104104Not Available1277Open in IMG/M
Ga0102925_1128850Not Available1116Open in IMG/M
Ga0102925_1142300Not Available1049Open in IMG/M
Ga0102925_1152026All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1006Open in IMG/M
Ga0102925_1157109All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter → unclassified Psychrobacter → Psychrobacter sp.986Open in IMG/M
Ga0102925_1158951Not Available978Open in IMG/M
Ga0102925_1164470Not Available958Open in IMG/M
Ga0102925_1199063Not Available849Open in IMG/M
Ga0102925_1250613All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium735Open in IMG/M
Ga0102925_1305254Not Available651Open in IMG/M
Ga0102925_1324438Not Available627Open in IMG/M
Ga0102925_1351878Not Available597Open in IMG/M
Ga0102925_1395837Not Available555Open in IMG/M
Ga0102925_1461303All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta506Open in IMG/M
Ga0102925_1467259Not Available502Open in IMG/M
Ga0102925_1469342Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0102925_1000273Ga0102925_100027317F101126LDGYDNEEEMIEACEEFIYENLNFSASSVEITYLSDEDEKI*
Ga0102925_1015174Ga0102925_10151744F035190MIKELYIRNPEDPNYKINVLDHSDPIESIISKIKMILGTRKGEVIGDFNFGLGIEDLIFETRINKLNLEENIRNQINTYIDESADYKIDPEVSFGRAKEGYDYCVIDIYIDNNKTYGILVK*
Ga0102925_1062290Ga0102925_10622902F097996MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEQFYEIRDTILGD*
Ga0102925_1075862Ga0102925_10758621F007072MLNRENINSHNSKKGQISLGDAPQVVMIVGFVFLIMATIAYVSEQYGDALTENGSAANITDDLESELSDNTSIAGIVLTISLVGIVLSVLIGIFVSSRRGGM*
Ga0102925_1087506Ga0102925_10875063F036014MAVFQSRDTRTFEAGGNISTGQFKFVALAADGQVD
Ga0102925_1093877Ga0102925_10938774F005874MRMRARKATMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWQDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDAQREWL*
Ga0102925_1104104Ga0102925_11041041F086685MIELTSIPLVLWAVGCAAFVIVGHELTHYLAWLPVATSIEYHFEEQYIEAEYPDTPFARKWAAVAGISPIIVATGLVVALIATGWDPAASWHHITASAAMVLYGVSGGKSDFQALLALIKTRGSLG
Ga0102925_1128850Ga0102925_11288504F005874MAMIPNDPPDDELTPRQLYDRFEDAVNLDVDELRAFKASEYNEAYNSMKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEARNMQKREAASIRW
Ga0102925_1142300Ga0102925_11423002F056035MSLLYKPKEEQTITCEIKQEDGKIILDFYSDWGKFGTDEMFDGYKLTPERLLQILQDRDDYSEDEL*
Ga0102925_1152026Ga0102925_11520261F052252MSNYNPNEFVNPQQIRSPYTGETSRPTFNHFTQDGKSYEQAVFSDPVTGHMIKKGIVSIKDAESGETIADYNTVHSFSSTVQSR*
Ga0102925_1157109Ga0102925_11571091F000695LIYAENFRAEEFREWADDISPRLVTMLDILRHRIGSPIVIS
Ga0102925_1158951Ga0102925_11589511F050177MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELEAFRDSEYNEEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPD
Ga0102925_1164470Ga0102925_11644703F005874MLSPEELYDRVEDTVNLSVDELFAFKRSEYNEEYNARKSDQAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDRDMTMREAASIRWGIDPDDEREWL*
Ga0102925_1199063Ga0102925_11990632F075754MAMSYQVGIEWHTPMNPWEPIHARVDDTSEWYAAQVGRSEYLRDSEEDADMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSIRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPLGQPISPPPGIEVFGQG*
Ga0102925_1235879Ga0102925_12358792F100427MTEVPLLVWIPFWALIATIGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTARLA*
Ga0102925_1250613Ga0102925_12506131F020197LRTTAKHMRKSIDISIRKTFERLPEFTSDESKSQEVFITLSYLHKMRKQLDDFQAKHSEDFKGE*
Ga0102925_1305254Ga0102925_13052542F086685SMIDITTIPLVLWVLGCILFVILGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTAFARKWAVVAGISPVIVATGLLLALIATGWQPTATWHHITASVAVLLYGISGGKSDFDALFNLVRTLRTTS*
Ga0102925_1324438Ga0102925_13244383F086685MIDITTIPLVLWVLGCITFVILGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTPFARKWAVVAGISPVIVATGLLLALIATGWQPTATWHHITASVAVLLYGI
Ga0102925_1351878Ga0102925_13518782F032166DEWRDLDDGFNEVEEAEELLDFQRRTQGQIEAQGLGENYLTDARDMTKREAASIRWAIDPDTEREWL*
Ga0102925_1395837Ga0102925_13958371F038111SVPCGQFYYQNMIHRVPVVKKFEYTIWLENYKGIANFIHADVYKYNKTVREDFGKDLDKLMDLHVDPLYVLTETDNKKLKKFMSIYGLELDHRPDCDDGVAREVFRLTRRQ*
Ga0102925_1461303Ga0102925_14613031F001506MNRILYENRCKCNEEFSITKKRKSNTRSEGKPLQYPKPSEITSKTFQIKYHEDLSTTAKFILNSFQNKYIYYAMDDILYSLKSNPVERDNLLAVLYSPVLSLQNNFSVNFFDIWIRDIYIDEMSKPNKFLKQNSENLEK
Ga0102925_1462249Ga0102925_14622492F100495FVVLIHATFENKADADHIFNQSEAVATNASVALIGQVGERTSYCSVSEEQPDGSLVVDRQWNIDRFGIVRNTDPIPYEEIPPWIQPTGVQDAYPLLDERGNPTRVTDEGLVWENTSPNNTNKPGVFGWVQV*
Ga0102925_1467259Ga0102925_14672592F059653LTNLEALQSQTEYSNDNLLEKILLDHGLTASASYAAGNSKDIDLCAASLYFTLAAHPEFRDGATSIKYNPTQLIAMARSILQKYGLNEPTVDGASIW*
Ga0102925_1469342Ga0102925_14693421F097996MAIIKDGMHPRYLGFQCDWPVFVKIPFSADGKNWKKREHFNWAERDLERKDVASLYAQGLIYHNTELAKENKVGDRLSEMNTEELKSLVTQINAIVKDRTTSSQEYNNKRCKQSKIEDKQRGLIRRFLNRNPWVIEDFYRIRDHIIGD*
Ga0102925_1470834Ga0102925_14708342F104555MSSRLDEIMEDPLGGEHLAALPVTDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF*
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