NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007643

3300007643: Biofilm microbial communities from a marine aquaculture plant in North Sea, Germany



Overview

Basic Information
IMG/M Taxon OID3300007643 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118073 | Gp0127839 | Ga0104854
Sample NameBiofilm microbial communities from a marine aquaculture plant in North Sea, Germany
Sequencing StatusFinished
Sequencing CenterMax Planck Institute for Evolutionary Biology
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1479598893
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Bizionia → Bizionia argentinensis1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBiofilm Microbial Communities From A Marine Aquaculture Plant In North Sea, Germany
TypeEngineered
TaxonomyEngineered → Built Environment → Unclassified → Unclassified → Unclassified → Biofilm Marine Aquaculture Plant → Biofilm Microbial Communities From A Marine Aquaculture Plant In North Sea, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationNorthern Germany
CoordinatesLat. (o)54.13Long. (o)8.8Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001823Metagenome / Metatranscriptome630Y
F006745Metagenome365Y
F028211Metagenome192Y
F028441Metagenome / Metatranscriptome191Y
F041945Metagenome / Metatranscriptome159Y
F064415Metagenome / Metatranscriptome128Y
F073087Metagenome120Y
F077438Metagenome / Metatranscriptome117Y
F079616Metagenome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104854_10162756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella5767Open in IMG/M
Ga0104854_10220181All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes95276Open in IMG/M
Ga0104854_10492196All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria15894Open in IMG/M
Ga0104854_10517343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5088Open in IMG/M
Ga0104854_10564938All Organisms → cellular organisms → Bacteria562Open in IMG/M
Ga0104854_10642477All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1924Open in IMG/M
Ga0104854_10642770All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria10624Open in IMG/M
Ga0104854_10726346All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium565Open in IMG/M
Ga0104854_10965931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2032Open in IMG/M
Ga0104854_10998227All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.1021Open in IMG/M
Ga0104854_11006329All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Bizionia → Bizionia argentinensis37759Open in IMG/M
Ga0104854_11156522All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium635Open in IMG/M
Ga0104854_11200687All Organisms → cellular organisms → Bacteria665Open in IMG/M
Ga0104854_11279835All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes17383Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104854_10162756Ga0104854_101627565F006745MRTSERHRRASSAVVVYVIVLMSLQVFLVTVAAEAVLDDDEALAWATAGLSVALFLAAAAFLRYLRP*
Ga0104854_10220181Ga0104854_1022018122F028441MTIKQLIKIEDKAKEVWVISPGLHYDTEHKDFSELVSVNLGQKTKYRYIVPATPQIEKHIKVYQKLYGASNADIQKNFLFLPKTEFHPFIMECAIYDASSTCIACTAPALEDGNDVIRLGEKTAKAMAKHFKLLWRKYKRTNP*
Ga0104854_10492196Ga0104854_1049219623F001823AFDRDLICGEHYGQRPVQAPHQQAEHMAAPTSSVLTIKKTLANTEPSTHGT*
Ga0104854_10517343Ga0104854_105173434F073087MSLSQGVKVMTTQHHTSFSKTIVGSAQRLFRSSKSHGLLASSHIDARTMRDIGVNPVGFN
Ga0104854_10564938Ga0104854_105649381F077438SLCCVYSTHRVERPFAQSRFETLFLWSLQVEISSDLMPTVEKEISSNKN*
Ga0104854_10642477Ga0104854_106424771F073087MTRQHHTSFTRAILKSTQRLLRANSNGNLLASNHIDARTMRDIGISRVGMS*
Ga0104854_10642770Ga0104854_106427701F073087MTRQHHTSFTSAILKSTQRLLRASSNGNLLASNHIDARTMRDIGISRVGMS*
Ga0104854_10726346Ga0104854_107263461F028441MTIKQLIKIEDKAKEVWVISPGLHYDTEHKDFSELVSVNLGQKTKYRYIVPATPQIEKHIKVYQKLYKATDEDIQKNFLFLPTTEFHPFIMECAIYDASSSCIACTAPALDDSNDVIRLSANTAKSMAKHFKLLWKKYKRTNP*
Ga0104854_10965931Ga0104854_109659311F064415MSSLDHVVGPEEHELLTVQEATDYLRIGRSLGYQLAHEYLNSGGTSGLPVILFGEKCYLVSRCALVELATTVRV
Ga0104854_10998227Ga0104854_109982272F073087MTTQHHTSFTKAIVGSAQRLFRSGKHHGMLASSHIDARTMRDIGVNPVGLR*
Ga0104854_11006329Ga0104854_1100632938F079616MFKIGEIVVCVNARRKWYRLGGLEKNQMYTVTGFNPYDGGLILKEVKSPRSGYNAFAANRFRKVDYNFATHILEEMQSQQQPIPQPEVEPQLQPQKFELSLLN*
Ga0104854_11156522Ga0104854_111565221F028211SSIWMGISPGVQSTRVIAMTGSEIILKAHLKQDSTHPRGLAALLEAISLWQGVPVRAALCADAPGLSCDSNLCREAFSDDGGPLYSITWVHAGAHRRRRRGIDGLGSFSDLERVLIAEVAR*
Ga0104854_11200687Ga0104854_112006871F041945SPERMYREIKRLQEENRYLMRQREILKKAMSILGESPQTNMR*
Ga0104854_11279835Ga0104854_112798354F028441MTIKQLIKLEDKAKEVWVISPTLHYDTENKDFTELVSVNLGEKTKYRYIVPASRTVLKNLKVFKKTYKVTDAEIQQIFCLLPESEFNPFIQEIAIYNASNECVACAGSSTEDTNDVIKFDHAHAKAMAKSFKAIWKKYKMVNP*
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